Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1073
         (416 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    25   0.45 
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    23   1.4  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    23   1.8  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    21   5.6  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              20   9.7  

>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 24.6 bits (51), Expect = 0.45
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
 Frame = +3

Query: 12  IVDPRAAGVIAAT---LQTSTNRRRLYYNDDHFRYWLGDSRSLSSLQRYRDDR 161
           ++DPR   +I ++   +  ST  R        F+ WLGD   +S+ Q++R+ R
Sbjct: 93  LIDPRDVEIILSSNVYIDKSTEYR-------FFKPWLGDGLLISTGQKWRNHR 138


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 23.0 bits (47), Expect = 1.4
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +3

Query: 78  LYYNDDHFRYWLGDSRSLSSLQRY 149
           L Y D H   W+G    ++ L+RY
Sbjct: 53  LLYQDVHVMIWIGFGFLMTFLRRY 76


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 13/35 (37%), Positives = 15/35 (42%), Gaps = 5/35 (14%)
 Frame = -1

Query: 371 CCKYTSRSD-----VTPHCANVFLNFTCRVSQCYT 282
           CC   S SD     +   C N   N TC +S  YT
Sbjct: 145 CCGVHSLSDYNDKPIPASCCNSPENNTCSISNSYT 179


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +2

Query: 92  RSLSVLARGLTLAFIPATVQRRSPCEPLYVYPVS 193
           R  +VLA  LT  +      RR  C  + +YP S
Sbjct: 193 RPCNVLATSLTEPYTLRNYGRRINCTYVALYPSS 226


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.2 bits (40), Expect = 9.7
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +1

Query: 103  GTGSGTHARFHP 138
            G GSGTH  F P
Sbjct: 1794 GGGSGTHNVFSP 1805


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,405
Number of Sequences: 438
Number of extensions: 1976
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10626762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)