Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1069
         (665 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase Byr1|Schizosacchar...    29   0.80 
SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyc...    27   3.2  
SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomy...    25   7.4  
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    25   7.4  
SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1 |Schizosaccha...    25   7.4  
SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor Crm1|...    25   7.4  
SPBC14F5.08 |med7||mediator complex subunit Med7|Schizosaccharom...    25   9.8  

>SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase
           Byr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 340

 Score = 28.7 bits (61), Expect = 0.80
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +2

Query: 332 TEMFPECVRNGTYTVTTNTWS-GIKGLYGLSRSVMW 436
           T M PE +R G YTV ++ WS GI  +   ++ + W
Sbjct: 224 TYMSPERIRGGKYTVKSDIWSLGISIIELATQELPW 259


>SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 807

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = -2

Query: 394 RPCICCNCVCAIP 356
           RPCICCN V   P
Sbjct: 81  RPCICCNSVLRYP 93


>SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 510

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 471 GANNITDELATTHITERDRPY 409
           G++ + D LA T I +RD PY
Sbjct: 56  GSSTLVDPLADTSICKRDLPY 76


>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1014

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +3

Query: 261 LLVDL*KSTTMNQMKLFLKDCG 326
           L+ +L    + N++K+F KDCG
Sbjct: 593 LVTNLPSDISENELKIFFKDCG 614


>SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +2

Query: 338 MFPECVRNGTYTVTTNTWS 394
           M PE +  G+YT++++ WS
Sbjct: 246 MAPERISGGSYTISSDIWS 264


>SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor
           Crm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1078

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = -1

Query: 332 SDPTIFQKEFHLVHRRTLSKVH*EIQQWAMTPPRGL*NIVQAFFQGYHLC 183
           SD T+ Q++   +++  L+ V    Q+W    P  +  IVQA      LC
Sbjct: 103 SDETVLQQQKTFLNKLDLTLVQILKQEWPHNWPNFIPEIVQASKTNLSLC 152


>SPBC14F5.08 |med7||mediator complex subunit
           Med7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 376

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
 Frame = +2

Query: 314 ERLWGLTEMF--PECVRNGTYTVTTNTW 391
           E +  L ++F  P C+ +GTY +  +TW
Sbjct: 54  EEIESLAKLFKKPSCLTSGTYQMFGDTW 81


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,689,229
Number of Sequences: 5004
Number of extensions: 54262
Number of successful extensions: 139
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)