Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1069
         (665 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025470-5|AAB71053.1|  109|Caenorhabditis elegans Hypothetical ...    80   2e-15
Z83111-1|CAB05532.1|  331|Caenorhabditis elegans Hypothetical pr...    28   6.8  
Z71262-1|CAA95813.1|  418|Caenorhabditis elegans Hypothetical pr...    28   6.8  
U58757-3|AAC47921.3|  620|Caenorhabditis elegans Hypothetical pr...    27   9.1  
AL032641-4|CAA21647.1|  454|Caenorhabditis elegans Hypothetical ...    27   9.1  

>AF025470-5|AAB71053.1|  109|Caenorhabditis elegans Hypothetical
           protein W10D9.5 protein.
          Length = 109

 Score = 79.8 bits (188), Expect = 2e-15
 Identities = 39/92 (42%), Positives = 65/92 (70%), Gaps = 5/92 (5%)
 Frame = +2

Query: 281 EYDDEPD----ETLSERLWGLTEMFPECVRNGTY-TVTTNTWSGIKGLYGLSRSVMWVVA 445
           ++DD PD    ET+ ER+ GL EMFP+ +R+  + TV  + W G+KG++ L++S +WVV+
Sbjct: 7   DFDDIPDSEIHETIVERIEGLGEMFPDALRSAVHSTVDWSIW-GVKGVFSLTKSTIWVVS 65

Query: 446 SSSVILFAPVIFEVERAQVAEMEKSQQKQVLL 541
           ++S+I F P I E ER+ + + + +QQ+Q+LL
Sbjct: 66  TTSLIAFLPYIIEKERSDLEKTQVAQQRQMLL 97


>Z83111-1|CAB05532.1|  331|Caenorhabditis elegans Hypothetical
           protein F57G8.1 protein.
          Length = 331

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -1

Query: 554 LCLSIITPVFVVTFP 510
           LCL +  PVFV+TFP
Sbjct: 243 LCLQVFIPVFVLTFP 257


>Z71262-1|CAA95813.1|  418|Caenorhabditis elegans Hypothetical
           protein F22D6.1 protein.
          Length = 418

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
 Frame = +2

Query: 116 NMLMDLTDELELSDSGM--ESLTTSKDDTPERRPEQY 220
           N L+ +TD++++SD G+  +  T   DDT ++ P ++
Sbjct: 274 NCLLSITDQIKISDFGLSDDKRTEMHDDTLDKVPVKW 310


>U58757-3|AAC47921.3|  620|Caenorhabditis elegans Hypothetical
           protein C01B10.10 protein.
          Length = 620

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +2

Query: 320 LWGLTEMFPECVRNGTYTVTTNTW 391
           +W  TE  P C+ N T+T +   W
Sbjct: 69  VWNATEYGPACMSNSTWTQSPQKW 92


>AL032641-4|CAA21647.1|  454|Caenorhabditis elegans Hypothetical
          protein Y5F2A.4 protein.
          Length = 454

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 2  DCSEK*DLKRFLVRTELY*YDNLFTKKN 85
          DC +  DLKR+L + EL  + N+   KN
Sbjct: 8  DCGKTFDLKRYLTKHELRMHKNVVKSKN 35


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,726,421
Number of Sequences: 27780
Number of extensions: 305058
Number of successful extensions: 835
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 835
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)