Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1068
         (726 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    30   0.39 
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr...    27   3.6  
SPBPB2B2.18 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual        26   4.8  
SPBC1718.03 |ker1||DNA-directed RNA polymerase I complex subunit...    26   6.3  
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    25   8.3  
SPBC19G7.09 |ulp1||SUMO deconjugating enzyme Ulp1|Schizosaccharo...    25   8.3  

>SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 646

 Score = 29.9 bits (64), Expect = 0.39
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = -3

Query: 601 KSSCSSAFFVDFHESFLESSRDYNLVILNNARCWLLEYL*HPNL 470
           +SS +S  F DF   FL   RDY+L   N++ C L   +  P++
Sbjct: 231 RSSLNSKTFNDFRTLFLLLIRDYSLFHGNSSHCMLANSMLPPSI 274


>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 872

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = -3

Query: 295 TESWLLIR*LYHLCTQFFVFSVKQRL 218
           TE WL  R  Y LC  F    VKQ+L
Sbjct: 108 TEIWLFCRLGYPLCALFNCLPVKQKL 133


>SPBPB2B2.18 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 175

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +2

Query: 116 QGHWHVPFNASETEEKDFHVDEKTTIK 196
           Q  WH P N    E++  H D+  TIK
Sbjct: 63  QCDWHEPANVYSIEQRRSHDDDLPTIK 89


>SPBC1718.03 |ker1||DNA-directed RNA polymerase I complex subunit
           subunit Ker1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 147

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 12/49 (24%), Positives = 26/49 (53%)
 Frame = +2

Query: 176 DEKTTIKKPTMRLLQSLFYTENEELGAKMIELPYKEPGFRMVVVLPDKI 322
           DEK+  +    +L + L Y + EE+    + LP + P    +++ P+++
Sbjct: 38  DEKSGSESVLSQLNRVLMYLKGEEIPLISLNLPVQGPPTEELIIPPEEM 86


>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = -1

Query: 669 STLNGRDGAGLDSEDVGTAISPVKAPAVAPSSSTFTKAS 553
           S +N   G  + S+    ++SP   P  +PS+S  +K +
Sbjct: 142 SVINSPTGTAVSSQISTLSMSPSSTPVFSPSASVSSKVA 180


>SPBC19G7.09 |ulp1||SUMO deconjugating enzyme
           Ulp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 568

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -3

Query: 145 CVERNVPVPLEENDV 101
           CV RNVPV   +ND+
Sbjct: 537 CVSRNVPVQFSQNDM 551


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,949,430
Number of Sequences: 5004
Number of extensions: 59308
Number of successful extensions: 218
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)