Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1065
         (631 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces pomb...    28   0.97 
SPCC1322.14c |vtc4||vacuolar transporter chaperone |Schizosaccha...    26   5.2  
SPCC777.12c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   9.0  
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    25   9.0  
SPAC12G12.10 |||WD repeat protein, human WDR21 family|Schizosacc...    25   9.0  

>SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 695

 Score = 28.3 bits (60), Expect = 0.97
 Identities = 13/45 (28%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
 Frame = -1

Query: 496 TTVGDHDSSITVVNRNYTV----K*AKVCYIRGQRKQIYSTFPPT 374
           ++  DH    T+ + N+ V    K +K+  +  +RK+++S+FP T
Sbjct: 46  SSTNDHQERDTINDTNFVVPEKQKTSKLALLAAERKKLHSSFPST 90


>SPCC1322.14c |vtc4||vacuolar transporter chaperone
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 721

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +2

Query: 326 NYDERVKEVKKFNNQNRW 379
           NYD+  KE+K+ N+Q  W
Sbjct: 21  NYDKLKKEIKRRNDQGGW 38


>SPCC777.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 238

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +2

Query: 2   LQVKISKIHYQDGGCSF-NEVLTPLTVKHFQNCYDSKRWFIQ 124
           LQV   K +  D  C+F N  +  L+ K + +  +S +WF+Q
Sbjct: 36  LQVPYEKYN-TDPVCAFDNSTVVELSDKTWDHVIESGKWFVQ 76


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
            Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 16/91 (17%), Positives = 42/91 (46%)
 Frame = +2

Query: 263  QNMSQDNNPLPEMIDQLIIDANYDERVKEVKKFNNQNRWRKRGINLLPLSSNITYFGLFN 442
            +++++D   L + +   I + N  E+  +V++  +Q+  + + ++LL   +        +
Sbjct: 1294 RDVAEDTKSLGKELQNKINEKNLAEQ--KVEELQSQSFTKNKEVDLLRKKAQKAILKQAD 1351

Query: 443  CIISVYHGDGTVVITHGGIEMGQGINTKAAQ 535
             + +   G G  ++ H  +     I  +AAQ
Sbjct: 1352 VVCATLSGSGHDLVAHSSLNFSTVIIDEAAQ 1382


>SPAC12G12.10 |||WD repeat protein, human WDR21
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 420

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = +2

Query: 335 ERVKEVKKFNNQNRWRKRGINLLPLSSNITYFGLFNCIISVY 460
           ER+K  K+FNN ++ R +G    P+ +  TY  LF+   S Y
Sbjct: 39  ERLKRGKRFNNISKERTKGKGGNPVFNFSTY--LFDRQFSQY 78


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,374,978
Number of Sequences: 5004
Number of extensions: 42374
Number of successful extensions: 95
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)