Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1065
         (631 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   1.9  
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    23   3.2  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    23   3.2  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   4.3  
AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    22   4.3  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = +2

Query: 299  MIDQL-IIDANYDERVKEVKKFNNQNRWRKRGINLLPLSSNITYFGLFNCIISVYHGDGT 475
            ++D+L  + +NY E VKE K  N         ++  P  + + +   FN +I +    GT
Sbjct: 893  ILDKLPTLISNYIEAVKEGKFMNVNMLDTYESVHSFPTETGLPFVYTFN-VIKLTKTSGT 951

Query: 476  V 478
            V
Sbjct: 952  V 952


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +2

Query: 425 YFGLFNCIISVYHGDGTVVITHG-GIEMGQGI 517
           + GL NC+  ++  DG   +  G G+ + QGI
Sbjct: 156 FTGLGNCLTKIFKADGITGLYRGFGVSV-QGI 186


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +2

Query: 425 YFGLFNCIISVYHGDGTVVITHG-GIEMGQGI 517
           + GL NC+  ++  DG   +  G G+ + QGI
Sbjct: 156 FTGLGNCLTKIFKADGITGLYRGFGVSV-QGI 186


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 6/14 (42%), Positives = 8/14 (57%)
 Frame = -1

Query: 232 VKCDHFHNLFYHCY 191
           + C  F   F+HCY
Sbjct: 417 LSCSSFFQQFFHCY 430


>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 630 LPPVTILLGEVKLELGFTLIFSN 562
           LPPVT   GE  L++    I+SN
Sbjct: 44  LPPVTPPQGENMLDMDLRGIYSN 66


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,853
Number of Sequences: 438
Number of extensions: 3103
Number of successful extensions: 32
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)