Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1063
         (731 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    27   0.24 
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    27   0.24 
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    27   0.24 
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    23   2.2  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           23   2.2  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   5.2  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    22   6.8  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   6.8  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        21   9.0  

>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 26.6 bits (56), Expect = 0.24
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = +1

Query: 517 KY*KSKERHARKHQDDLDRDPNKSIIKSR*H*GDRKDREESRRH 648
           +Y +S+ER    ++++ +    +   K R    DRK+RE+S+ H
Sbjct: 38  RYSRSREREQNSYKNEREYRKYRETSKERSR--DRKEREKSKEH 79


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 26.6 bits (56), Expect = 0.24
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = +1

Query: 517 KY*KSKERHARKHQDDLDRDPNKSIIKSR*H*GDRKDREESRRH 648
           +Y +S+ER    ++++ +    +   K R    DRK+RE+S+ H
Sbjct: 38  RYSRSREREQNSYKNEREYRKYRETSKERSR--DRKEREKSKEH 79


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 26.6 bits (56), Expect = 0.24
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = +1

Query: 517 KY*KSKERHARKHQDDLDRDPNKSIIKSR*H*GDRKDREESRRH 648
           +Y +S+ER    ++++ +    +   K R    DRK+RE+S+ H
Sbjct: 38  RYSRSREREQNSYKNEREYRKYRETSKERSR--DRKEREKSKEH 79


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 10/37 (27%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = +1

Query: 124 RSRISKAKTWFCYYRYSRWPRTGK-MEFSSRGYTHCH 231
           ++++++   WF YY Y       + M  +S  Y  CH
Sbjct: 428 QAKVNRQPVWFYYYTYKGAHSISEIMSGTSNKYGVCH 464


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 10/37 (27%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = +1

Query: 124 RSRISKAKTWFCYYRYSRWPRTGK-MEFSSRGYTHCH 231
           ++++++   WF YY Y       + M  +S  Y  CH
Sbjct: 428 QAKVNRQPVWFYYYTYKGAHSISEIMSGTSNKYGVCH 464


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 67  LTKKPTGRTTSCRFLQPGGST 5
           L KKP+  +T   FLQP  +T
Sbjct: 547 LEKKPSRSSTLVSFLQPFSNT 567


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -2

Query: 280 FKTRMFGRCWLFECSG 233
           F   +FG  W+F C G
Sbjct: 57  FSLPIFGTRWIFSCIG 72


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 9/35 (25%), Positives = 17/35 (48%)
 Frame = -2

Query: 112 FIFDVFVIASLTNICLTKKPTGRTTSCRFLQPGGS 8
           ++F   + A+   +  T       TSC++L  GG+
Sbjct: 5   YVFTTLINAAFLCLASTILSESAGTSCKWLSEGGN 39


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2

Query: 542 MQENTKMIWIETPTNPLLKVV 604
           MQEN KM W+    + LL  V
Sbjct: 238 MQENDKMSWLFESEDVLLPSV 258


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,300
Number of Sequences: 438
Number of extensions: 5107
Number of successful extensions: 19
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22779405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)