Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1060
         (679 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.07 |atp4||F0-ATPase subunit|Schizosaccharomyces pombe|c...    29   0.62 
SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ...    28   1.4  
SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|c...    27   1.9  
SPAC31G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   2.5  
SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces p...    26   4.4  
SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2 |...    26   4.4  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    26   5.8  
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa...    26   5.8  
SPCC417.06c |ppk35|mug27|serine/threonine protein kinase Ppk35|S...    26   5.8  
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa...    25   7.6  
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa...    25   7.6  
SPAC6F6.08c |cdc16|bub2|two-component GAP Cdc16|Schizosaccharomy...    25   7.6  

>SPBC1604.07 |atp4||F0-ATPase subunit|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 29.1 bits (62), Expect = 0.62
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = +1

Query: 280 RILRTTLKKYTMRPNTTDKTV*VHMPTDTKLPNLRRSKIASDPETS 417
           R++  + +K+++ P T DKT    +P D K  N+    I+S P TS
Sbjct: 21  RLVLPSTRKFSLTPTTFDKTPSGRIPPDQKAANI----ISSVPSTS 62


>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
           factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 2/97 (2%)
 Frame = +1

Query: 232 KQAPLLDTTGRTERKSRILRTTLKKYTMRP-NTTDKTV*VHM-PTDTKLPNLRRSKIASD 405
           K+   L   G ++  +   +  LKK  +RP NT+   + +   PT+T  PNL  S+ ++ 
Sbjct: 124 KRIVTLQNDGGSKNTTARKQKQLKKNGLRPLNTSASRIGLSSSPTNTPSPNLPVSQPSAS 183

Query: 406 PETSPARISTRTAKTISSRYVTGQTVTVSTRKTTYLR 516
           P  S  +    +AK I  R    Q + ++     +LR
Sbjct: 184 PHYSGDK---NSAKGIDLRTRVIQLLAIAPETEDFLR 217


>SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 625

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +1

Query: 355 PTDTKLPNLRRSKIASDPETSPARISTRTAKTISSRYVT 471
           P  + LP+   S I+ D ETS A + + +  T +S  VT
Sbjct: 273 PKASLLPSTTESSISKDHETSQAPLGSESVDTQASENVT 311


>SPAC31G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 234

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = -3

Query: 674 FVGLLVIILRKSFESVLRVGLLCSSGSSFLPCFFVSNTCSPHIWSLFYL 528
           F+ LL I+     +S L   L   S   F+PC    +T    +W LF+L
Sbjct: 177 FISLLQILPEPFLKSQLSHTLPVGSKYFFVPCDKKHHTLGLLLWKLFFL 225


>SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 360

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
 Frame = +3

Query: 90  IDVFQIDIEP---EEAQKYLNSPPFTDPQLAGRTAVLP 194
           ID+  +D  P   E AQKY+ + PFT P  A     LP
Sbjct: 195 IDIVAVDASPSRVEFAQKYVGAKPFT-PIAAKENESLP 231


>SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 499

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 3/85 (3%)
 Frame = +3

Query: 291 DYVEEVYDASQYHGQD-GLGAYAYGYQTPESAKVENRVRSGDVTGSYIYKDGKNDLIKVR 467
           +YV  V    +  G+  G+G Y   +   E+ K+  R  +  V+ + +YK  +N     +
Sbjct: 291 EYVARVKATHENGGETKGIG-YRAPFSLEETRKLVLRTHTTAVSANMLYKLAQNGFHPAK 349

Query: 468 YWSDRDGFHQE--DNLPKVELKQVE 536
           Y+S    F  E  D     E  QVE
Sbjct: 350 YFSIDRVFRNETVDATHLAEFHQVE 374


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
            Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -2

Query: 315  HRILLQRSPQYSRFPFRSSSSVQEWGLL 232
            HR+++Q +P Y R        V E+ LL
Sbjct: 2067 HRLIIQMAPDYDRLTLLQKVEVFEYALL 2094


>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 639

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 19/80 (23%), Positives = 36/80 (45%)
 Frame = +3

Query: 240 PTLGHYWKNGKEIENTEDYVEEVYDASQYHGQDGLGAYAYGYQTPESAKVENRVRSGDVT 419
           PT+    +  K +     Y +  Y+ ++   +D   +    Y    + K+ NR++ GDV+
Sbjct: 334 PTIDEMVQEEKLLNKQRKYGQN-YEYAKQIAKDKTYSNNLDYLDENAGKLSNRMKRGDVS 392

Query: 420 GSYIYKDGKNDLIKVRYWSD 479
            + I   G  DL K+ +  D
Sbjct: 393 LAQISSGG--DLKKINHVLD 410


>SPCC417.06c |ppk35|mug27|serine/threonine protein kinase
           Ppk35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 624

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +2

Query: 236 RPHSWTLLEERKGNREY*GLR*RSIRCVPIPRTRRSRCIC 355
           R + WT   + KG   Y  L+   +  +  P TRR R  C
Sbjct: 59  RQNCWTKRNDPKGLTYYQLLKPSEVEILSRPETRRKRMAC 98


>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 548

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +2

Query: 356 LRIPNSRICEGRKSRQIRRRHRLVYLQGRQKRS 454
           L+ PN R    +K  + RRR R + LQ  Q  S
Sbjct: 516 LKSPNQRTANAKKRLEERRRRRKLKLQELQLNS 548


>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
           related|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 394

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = +3

Query: 273 EIENTEDYVEEVYDASQYHGQDGL--GAYAYGYQTPESAK 386
           E+  +ED V  V    + + ++ L  G YAYGY+TP + +
Sbjct: 10  ELTTSED-VNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQ 48


>SPAC6F6.08c |cdc16|bub2|two-component GAP Cdc16|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 299

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +2

Query: 140 KQPTIHRSSISWPHRCLTIDQIQRPEVSHS*SRPHSWTLL 259
           K P      IS     + +DQ++  E  +S +RP+ W +L
Sbjct: 15  KSPENQSKCISRLRYMVMLDQVESDEGGNSSTRPYVWAVL 54


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,687,173
Number of Sequences: 5004
Number of extensions: 55268
Number of successful extensions: 176
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)