Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG1052
(637 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 29 0.56
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 29 0.56
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 28 0.98
SPAC13G6.05c |||TRAPP complex subunit Bet3 |Schizosaccharomyces ... 28 0.98
SPCC594.06c |||SNARE Vam7 |Schizosaccharomyces pombe|chr 3|||Manual 28 0.98
SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase |Schiz... 27 3.0
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch... 27 3.0
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 26 4.0
SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory... 26 4.0
SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyce... 26 4.0
SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit ... 26 5.2
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ... 25 6.9
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos... 25 6.9
SPCP31B10.02 |||conserved eukaryotic protein|Schizosaccharomyces... 25 6.9
SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz... 25 6.9
SPAC25B8.13c |isp7||2-OG-Fe|Schizosaccharomyces pombe|chr 1|||Ma... 25 6.9
SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom... 25 6.9
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 9.1
SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ... 25 9.1
SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr ... 25 9.1
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 29.1 bits (62), Expect = 0.56
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +3
Query: 39 SPTNTNMKTFVILFGLVTVAVAAPQSPTEPIPILKQESSIEPDGSY 176
S TN N+ T ++ V V AAP S T + Q ++ P G +
Sbjct: 771 SVTNNNVATQPVIASTVPVQTAAPSSQTAVPQTIHQSNAFTPRGKH 816
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 29.1 bits (62), Expect = 0.56
Identities = 22/90 (24%), Positives = 41/90 (45%), Gaps = 3/90 (3%)
Frame = +1
Query: 172 PTNTLMRLEMVSPLPSEALSKTSALKNLLYRLKVNSSTQART---VVLSSCPTSPMRTAS 342
P +T ++ VS + + T+++ + + +SS Q ++ + SS +SP T S
Sbjct: 439 PASTRVQTTTVSSISTSVKQPTASVASSSVSVPSSSSVQPQSSTPISSSSSASSPQSTLS 498
Query: 343 SLRDHIYPHHPQFLKSSSALSHTSPPHPHS 432
+ + + L SSA+ TS P S
Sbjct: 499 TSSEVVSEVSSTLLSGSSAIPSTSSSTPSS 528
Score = 26.6 bits (56), Expect = 3.0
Identities = 22/71 (30%), Positives = 37/71 (52%)
Frame = +1
Query: 202 VSPLPSEALSKTSALKNLLYRLKVNSSTQARTVVLSSCPTSPMRTASSLRDHIYPHHPQF 381
VS + S S T++ ++ L NSST A ++ LSS + + T+S+ + H P
Sbjct: 766 VSNISSNLPSATASSQSQL----TNSSTLATSLYLSSSSSRTISTSSTNEYNTSFHAPTV 821
Query: 382 LKSSSALSHTS 414
++S+ S TS
Sbjct: 822 SSTTSSSSTTS 832
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 28.3 bits (60), Expect = 0.98
Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 10/88 (11%)
Frame = +1
Query: 208 PLPSEALSKTSALKNL----LYRL--KVNSSTQARTVVLSSCPTSPMRTASSLR----DH 357
PLPS S +S LY L ++ S + S SP RT S +R D
Sbjct: 175 PLPSSVSSHSSPYSTTSSTSLYSLYNDISLSCSPEPYLPLSPTRSPARTPSPIRLYSSDA 234
Query: 358 IYPHHPQFLKSSSALSHTSPPHPHSLKT 441
+ P P S ++ + +PP+P+SLK+
Sbjct: 235 LRPQSPL----SPSVEYLTPPNPYSLKS 258
>SPAC13G6.05c |||TRAPP complex subunit Bet3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 245
Score = 28.3 bits (60), Expect = 0.98
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = -3
Query: 506 NSTRITELTLFLSKLTE*LWPVVFR 432
N RITE T + L LWP+VFR
Sbjct: 61 NRNRITETTDVMRFLCRELWPIVFR 85
>SPCC594.06c |||SNARE Vam7 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 341
Score = 28.3 bits (60), Expect = 0.98
Identities = 21/63 (33%), Positives = 31/63 (49%)
Frame = +1
Query: 166 MGPTNTLMRLEMVSPLPSEALSKTSALKNLLYRLKVNSSTQARTVVLSSCPTSPMRTASS 345
+GP L R +M+ L SE LS +KN + + A + + SS P+SP R S+
Sbjct: 184 LGPGEILRRKDMLEQLGSEFLSFKRLVKNANSPV---APPSASSQLNSSNPSSPFRPLSA 240
Query: 346 LRD 354
D
Sbjct: 241 STD 243
>SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 603
Score = 26.6 bits (56), Expect = 3.0
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +2
Query: 8 PGLQESARGCFTDKYKHEDLCYSLRTCDGRG 100
P L R CF+ + D+ Y LR CD G
Sbjct: 521 PLLTSRVRFCFSASHNKADMDYFLRACDEVG 551
>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 515
Score = 26.6 bits (56), Expect = 3.0
Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Frame = +1
Query: 208 PLPSEALSKTS-ALKNLLYRLKVNSSTQARTVVLSSCPTSPMRTASSLRDHIYPHHPQFL 384
P PS + TS A+ + +S+Q+ T S + + +++ H HH
Sbjct: 70 PPPSPGILATSPAVLQKHQQEDSGNSSQSPTSPHPSNQPAMLSPSTAASQH---HHHHSS 126
Query: 385 KSSSALSHTSPPHPHSLKTTGHNY 456
SS A+S TSP P S G N+
Sbjct: 127 SSSYAVSPTSPTSPTSSGPIGSNF 150
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 26.2 bits (55), Expect = 4.0
Identities = 29/93 (31%), Positives = 46/93 (49%), Gaps = 4/93 (4%)
Frame = +1
Query: 205 SPLPSEALSK---TSALKNL-LYRLKVNSSTQARTVVLSSCPTSPMRTASSLRDHIYPHH 372
S L S LS TSA +L L K + ST + T+ S+ S ++T+SSL
Sbjct: 509 SSLSSSQLSTENFTSASSSLSLTNAKSSLSTPSTTIPTSNSSVS-LQTSSSL----IISS 563
Query: 373 PQFLKSSSALSHTSPPHPHSLKTTGHNYSVNLL 471
P S +A S ++P HS+ + +Y+ +L+
Sbjct: 564 PIISSSLTATSTSTPALTHSITPSNTSYTSSLI 596
>SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory
factor |Schizosaccharomyces pombe|chr 2|||Manual
Length = 633
Score = 26.2 bits (55), Expect = 4.0
Identities = 17/68 (25%), Positives = 33/68 (48%)
Frame = +1
Query: 328 MRTASSLRDHIYPHHPQFLKSSSALSHTSPPHPHSLKTTGHNYSVNLLKKRVNSVILVEF 507
M +ASS+R+ P+F SS ++++ + + GH+ + + R+N+ L
Sbjct: 1 MDSASSMRNRSPLGVPEFSYSSQSVNNIRGIKSRNRSSIGHSITDPQVASRINAFYLSNV 60
Query: 508 EMPIYFLT 531
+ I F T
Sbjct: 61 QSSIPFET 68
>SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 481
Score = 26.2 bits (55), Expect = 4.0
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +3
Query: 321 IANENGFQPQGSHLPTPPPIPEVIQRALAYLATAPP 428
I +++ P G LP PP I E+I ++ +Y+A P
Sbjct: 23 ITDQSSSVPAGVILP-PPAIREIIDKSASYVARNGP 57
>SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit
Rpn3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 497
Score = 25.8 bits (54), Expect = 5.2
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +1
Query: 439 TTGHNYSVNLLKKRVNSVILVEFEMPIYFL 528
TT H + V+ ++K N+V V+F +Y L
Sbjct: 265 TTAHEHLVSAIRKAPNTVYAVQFLEAVYKL 294
>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 25.4 bits (53), Expect = 6.9
Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
Frame = +1
Query: 178 NTLMRLEMVSPLPSEALSKTSA---LKNLLYRLKVNSSTQARTVVLSSCPTSPMRTASSL 348
N L + E+ SP S SK+S + L+ NS + V + + +A +
Sbjct: 289 NVLAKDEVGSPTWSPTPSKSSTNLRQDGVPPILRFNSLSINTNVARNYLSSEKGYSAHTQ 348
Query: 349 RDHIYPHHPQFLKSSSALSHTSPP 420
HP+ ++SA S TSPP
Sbjct: 349 NSSAQSPHPRVFSANSAFSTTSPP 372
>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 25.4 bits (53), Expect = 6.9
Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Frame = +3
Query: 342 QPQGSHLPTPPPIPEVIQRA--LAYLATAPPQP 434
Q QGS P PPP+P I + + T P P
Sbjct: 350 QVQGSRPPPPPPMPAPIYNVPNVPTVPTVSPNP 382
>SPCP31B10.02 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 143
Score = 25.4 bits (53), Expect = 6.9
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +3
Query: 357 HLPTPPPIPEVIQRALAYLATAPPQ 431
HLP PP + +V + + L PPQ
Sbjct: 99 HLPVPPDLAKVSLKETSSLEELPPQ 123
>SPBC354.05c |sre2||membrane-tethered transcription factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 793
Score = 25.4 bits (53), Expect = 6.9
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +1
Query: 304 LSSCPTSPMRTASSLRDHIYPHHP-QFLKSSSALSHTSPPHP 426
+ S T P + + + +P ++ KS +A+SHTS HP
Sbjct: 594 IDSMQTIPHANFNEMHNAYSSRYPLKYSKSCNAVSHTSMMHP 635
>SPAC25B8.13c |isp7||2-OG-Fe|Schizosaccharomyces pombe|chr
1|||Manual
Length = 397
Score = 25.4 bits (53), Expect = 6.9
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -1
Query: 304 VPPSSLGYWN*PSTCKAGSSAPMF 233
+PPSS+GY PS+ G + MF
Sbjct: 137 LPPSSIGYVLPPSSLANGEGSSMF 160
>SPCC132.01c ||SPCC1322.17c|DUF814 family
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1021
Score = 25.4 bits (53), Expect = 6.9
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 72 ILFGLVTVAVAAPQSPTEPIPILKQESSIEP 164
IL ++ A A+P S EP+P + SS +P
Sbjct: 184 ILLDEISTAYASPTSINEPLPDQQLSSSTKP 214
>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 230
Score = 25.0 bits (52), Expect = 9.1
Identities = 10/30 (33%), Positives = 22/30 (73%)
Frame = +1
Query: 493 ILVEFEMPIYFLTYLSNFRYSFLYFCTELF 582
+L+ F ++FL++ +F +SFL+F +++F
Sbjct: 116 LLLFFFFLLFFLSF--SFSFSFLFFLSQIF 143
>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein
Lsb1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 296
Score = 25.0 bits (52), Expect = 9.1
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +3
Query: 87 VTVAVAAPQSPTEPIPILKQESSIE 161
VT A P + P+P+ K++SS+E
Sbjct: 49 VTAPAAQPVESSVPLPLPKRKSSVE 73
>SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 727
Score = 25.0 bits (52), Expect = 9.1
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Frame = +1
Query: 331 RTASSLRDHIYPHHPQFLKS---SSALSHTSPPHPHSLKTTGHNYSVNLLKKRVNS 489
+++ SL H +P P+ +++ S S TSP P SLK N N ++ S
Sbjct: 131 KSSESLDSHTHP--PKRVRNEDDSLTFSKTSPVSPSSLKDGASNTVTNDASNKIKS 184
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,576,261
Number of Sequences: 5004
Number of extensions: 55312
Number of successful extensions: 190
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -