Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1048
         (389 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1235.03 |||SMR and CUE domain protein|Schizosaccharomyces po...    29   0.34 
SPAC212.04c |||S. pombe specific DUF999 family protein 1|Schizos...    27   1.4  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    27   1.4  
SPCC584.11c |||Svf1 family protein Svf1|Schizosaccharomyces pomb...    26   1.8  
SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|c...    26   2.4  
SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharom...    25   4.1  
SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4 |Schi...    25   5.5  
SPAC823.05c |tlg2||SNARE Tlg2|Schizosaccharomyces pombe|chr 1|||...    24   9.5  

>SPCC1235.03 |||SMR and CUE domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 399

 Score = 28.7 bits (61), Expect = 0.34
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -3

Query: 231 KVNKTSSANSSSDPLEEKNLIQRRRP*SQHPNPRTLKHQ 115
           ++N     NSS+ P+  +NLI R +P S   N   +K+Q
Sbjct: 116 QINHEFYKNSSAWPITIRNLIHRHQPLSNITNNELMKYQ 154


>SPAC212.04c |||S. pombe specific DUF999 family protein
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 288

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 228 LFTGHGTVYKVLVLCF*DARTGDFRIPPLPPICYGNSL 341
           L+ GH  VYK+L+L F       F+I     +C  N+L
Sbjct: 224 LYFGHWLVYKILILAF------GFKIVTSGDVCVSNTL 255


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -3

Query: 117 QCRIIEIRHPRLDIALSLRNVS 52
           +C I  I HP+LDIA SL  +S
Sbjct: 816 KCIITSITHPKLDIAESLEPLS 837


>SPCC584.11c |||Svf1 family protein Svf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 380

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -3

Query: 129 TLKHQCRIIEIRHPRLDIALSLRNVSSCSFE 37
           T +  CRI +++HP  D+  S  N+   SFE
Sbjct: 87  TAQSTCRIFDLKHPENDLWTS-TNMDQFSFE 116


>SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 596

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = -3

Query: 105 IEIRHPRLDIALSLRNVSSCSFELRYLIPVSL 10
           I+IRH +L  ++SLRN      ELR  +PV L
Sbjct: 287 IKIRH-KLKFSVSLRNPDGHISELRAALPVVL 317


>SPCC63.03 |||DNAJ domain protein, DNAJC11
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 642

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +2

Query: 194 SDELLALEVLFTFHRARH 247
           SD    LE+++TFH+ RH
Sbjct: 574 SDNEKELEIVYTFHQQRH 591


>SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = -3

Query: 294 RQFAHPKNIKLKLYKLCRAR*KVNKTSSANSSSDPLEEKNLIQRRRP*SQHP 139
           RQ    K++    Y L +    VNK +S+ S   PLEE +   + +  S HP
Sbjct: 164 RQENKIKHLSFHAY-LRKINSNVNKYASSQSFIPPLEEPSFTVKEKCPSGHP 214


>SPAC823.05c |tlg2||SNARE Tlg2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 301

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 19/72 (26%), Positives = 35/72 (48%)
 Frame = -1

Query: 218 LQVLTVHQIHSKKRI*YKEEDHNLNIQIQERSNISAESSKYDIHV*TSPYRFGMYRVAVL 39
           LQVL + Q     RI +  E   ++ +  E+  I AES + +    T   RF  + + ++
Sbjct: 233 LQVLVIEQGALVDRIDFNIEQTQVHAKSAEKELIKAESHQKN----TGRLRFICFLILLI 288

Query: 38  SCVILYL*VSLV 3
             +I+ L + L+
Sbjct: 289 VALIVILAIKLL 300


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,665,914
Number of Sequences: 5004
Number of extensions: 32663
Number of successful extensions: 79
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 128029482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)