Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1048
         (389 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0650 - 4948852-4950012                                           28   3.0  
08_02_0627 + 19449196-19449651,19449723-19449861,19450260-194503...    26   9.2  
02_04_0534 + 23725051-23726253                                         26   9.2  

>01_01_0650 - 4948852-4950012
          Length = 386

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -1

Query: 389 DGNSCILRVSFFKTTPERIPITNWWQRWDAKIASSRILKT 270
           DG +C  RV FF  TP+++ +    Q     +ASS + ++
Sbjct: 159 DGTACRRRVCFFAHTPDQLRVLPAQQSSPRSVASSPLAES 198


>08_02_0627 +
           19449196-19449651,19449723-19449861,19450260-19450381,
           19450685-19450888,19450981-19451040,19451628-19451820,
           19451880-19451998,19452189-19452413,19452534-19452728
          Length = 570

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -3

Query: 192 PLEEKNLIQRRRP*SQHPNPRTLKHQCRIIEIRHPRL 82
           PL    L+ RRR    +P+PRTL  +   +  RH  L
Sbjct: 18  PLPLPPLLHRRRRVVLNPSPRTLTTRAEALFSRHSHL 54


>02_04_0534 + 23725051-23726253
          Length = 400

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -2

Query: 94  TSTSRHRLIASECIELQF*AALSYTCKSPS 5
           TS +RH++++  C+E +  AAL Y    P+
Sbjct: 267 TSETRHKMVS--CMETEILAALDYNLSGPT 294


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,896,096
Number of Sequences: 37544
Number of extensions: 213116
Number of successful extensions: 490
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 490
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 660830060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)