Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1048
         (389 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   2.9  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     22   2.9  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   6.6  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    20   8.7  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    20   8.7  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +3

Query: 333 NSLWGRFKKGNS*DTTI 383
           +SL+GRFK+G   + T+
Sbjct: 603 SSLYGRFKRGKYEEPTV 619



 Score = 21.4 bits (43), Expect = 3.8
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = -2

Query: 100 NTTSTSRHRLIASECIELQF*AALSYTCKSPS 5
           N  S   H+++ S C        LS  CK P+
Sbjct: 43  NEASLKAHKVVLSACSSYFQKLLLSNPCKHPT 74


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +2

Query: 272 FLGCANWRFSHPTAATNLLWEFSLGSF 352
           F    N+ F H +    LLW+F   +F
Sbjct: 97  FTALGNFYFVHESLKNVLLWDFQECTF 123


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 20.6 bits (41), Expect = 6.6
 Identities = 10/44 (22%), Positives = 22/44 (50%)
 Frame = +1

Query: 37  LKTATRYIPKR*GDV*TWMSYFDDSALMFERSWIWMLRLWSSSL 168
           L +  RY+ +   D  TW+S   +S L  +   ++++ +  S +
Sbjct: 323 LTSILRYLQELHVDAPTWISSVTESVLKSKIGQVFLITILDSKV 366


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 20.2 bits (40), Expect = 8.7
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +3

Query: 45  CNSIHSEAIRRCLDVDVVFR 104
           CNS  +     CL VD++F+
Sbjct: 219 CNSKTNTGEYSCLKVDLLFK 238


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 20.2 bits (40), Expect = 8.7
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +3

Query: 45  CNSIHSEAIRRCLDVDVVFR 104
           CNS  +     CL VD++F+
Sbjct: 219 CNSKTNTGEYSCLKVDLLFK 238


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,857
Number of Sequences: 438
Number of extensions: 2335
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9514659
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)