Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1046
         (634 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A10.14 |sgf11||SAGA complex subunit Sgf11 |Schizosaccharom...    30   0.32 
SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac...    26   3.9  
SPAC26H5.06 |pot1||telomere end-binding protein Pot1 |Schizosacc...    25   6.9  

>SPAC57A10.14 |sgf11||SAGA complex subunit Sgf11
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 29.9 bits (64), Expect = 0.32
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +3

Query: 168 PGSDISETSAEIPFN-PHFSCLLTRRPANAKR 260
           PG DI   S + P N P++SCL+ +R   A R
Sbjct: 54  PGYDIYGNSVQTPSNVPYYSCLMCKREIAASR 85


>SPAC1751.01c |gti1||gluconate transporter inducer
           Gti1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -2

Query: 135 PHSPPRGLPPTTEMQRSILLTK*FSPRCHRLKSASISRRS 16
           P SPP   P TT +  +   +   +PR  + +  SIS  S
Sbjct: 210 PKSPPSSSPSTTNVSNASTSSAPINPRAPQTRRESISSTS 249


>SPAC26H5.06 |pot1||telomere end-binding protein Pot1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 555

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 13/55 (23%), Positives = 25/55 (45%)
 Frame = +3

Query: 174 SDISETSAEIPFNPHFSCLLTRRPANAKRLDTTVVIESLYFAINYYRKKDYYIIK 338
           +D +E     P +P+ S    R P     +   +  E  ++  NY ++ DY ++K
Sbjct: 234 TDYTENELFFPMSPYTSSSRWRGPFGRFSIRCILWDEHDFYCRNYIKEGDYVVMK 288


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,507,884
Number of Sequences: 5004
Number of extensions: 48565
Number of successful extensions: 75
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)