Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG1037
(552 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1289.09 |tim21||mitochondrial inner membrane presequence tra... 29 0.46
SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyc... 29 0.60
SPAC24B11.06c |sty1|spc1, phh1|MAP kinase Sty1|Schizosaccharomyc... 26 3.2
SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 4.2
SPAPB1A10.07c |||sphingolipid biosynthesis protein|Schizosacchar... 26 4.2
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe... 25 5.6
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 25 5.6
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 25 7.4
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar... 25 7.4
SPAC8F11.05c |mug130||sequence orphan|Schizosaccharomyces pombe|... 25 9.8
>SPBC1289.09 |tim21||mitochondrial inner membrane presequence
translocase complex subunit Tim21 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 223
Score = 29.1 bits (62), Expect = 0.46
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = +1
Query: 280 GMISHQLLGRCQKEEARYMDCLEAYGLERGKVKCAHLFGDY 402
G+I + L+ K EA Y D EA+ L + +C ++FGD+
Sbjct: 84 GLIIYALVTSIWKGEAHYGD--EAFELLKANEECRYVFGDH 122
>SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 721
Score = 28.7 bits (61), Expect = 0.60
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Frame = -2
Query: 326 ASSFWQRPRSWWEIMPPVTSVN--GERKNG--DKDMMFSEINAY 207
A++ W ++WW+I PP+ VN G+ G KD++ S A+
Sbjct: 203 AAAIWATGQTWWQI-PPIARVNLVGQLPKGLSGKDIIVSLCGAF 245
>SPAC24B11.06c |sty1|spc1, phh1|MAP kinase Sty1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 349
Score = 26.2 bits (55), Expect = 3.2
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +1
Query: 223 ENIMSLSPFFRSPFTDV 273
ENI+SLS F SPF D+
Sbjct: 77 ENIISLSDIFISPFEDI 93
>SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 525
Score = 25.8 bits (54), Expect = 4.2
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = -2
Query: 518 RGLTYFSSPVSFP*EICLCLSCLIAKNLLSCLV 420
R L Y S + + +C C+SC +A+N ++
Sbjct: 146 RKLVYIGSLIIY---VCFCISCALARNYAQLVI 175
>SPAPB1A10.07c |||sphingolipid biosynthesis
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 441
Score = 25.8 bits (54), Expect = 4.2
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Frame = +3
Query: 177 T*VYENQKR--FVCIYFRKHHVFVAVL-SLTVYGCYWWHDFPP 296
T VYENQK FV I F V+V ++ S +G Y W P
Sbjct: 390 TSVYENQKNDVFVRIGFSYAAVWVKIITSWVCHGLYVWSCLAP 432
>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1465
Score = 25.4 bits (53), Expect = 5.6
Identities = 11/46 (23%), Positives = 22/46 (47%)
Frame = -2
Query: 314 WQRPRSWWEIMPPVTSVNGERKNGDKDMMFSEINAYKPFLIFIHLG 177
W + ++ P + +N KNG+ +F ++ A K L+ +G
Sbjct: 584 WSKKTLKQQVTPTLRQINFVAKNGELTCIFGKVGAGKSSLLEACMG 629
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 25.4 bits (53), Expect = 5.6
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = -2
Query: 314 WQRPRSWWEIMPP 276
W+R RS W+I PP
Sbjct: 128 WKRKRSLWDIKPP 140
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 25.0 bits (52), Expect = 7.4
Identities = 10/42 (23%), Positives = 23/42 (54%)
Frame = +1
Query: 352 YGLERGKVKCAHLFGDYHECSTLTKQLKRFLAIRHERQRQIS 477
+ + GK++C H G++ S L ++ ++ H+ +R I+
Sbjct: 1324 FEITMGKLRCLHALGEWDRLSQLAQE--NWIHAGHDARRYIA 1363
>SPAC9G1.10c |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1191
Score = 25.0 bits (52), Expect = 7.4
Identities = 16/45 (35%), Positives = 18/45 (40%), Gaps = 4/45 (8%)
Frame = +3
Query: 258 TVYGCYWWH----DFPPTSGSLPERGSQIHGLSRSLWFGTRKGQV 380
TV G WH D TS S R +WFGTR G +
Sbjct: 486 TVTGLCHWHMPLGDTKVTSLSFKSSPENYSDDGRFVWFGTRDGML 530
>SPAC8F11.05c |mug130||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 241
Score = 24.6 bits (51), Expect = 9.8
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +3
Query: 261 VYGCYWWHDFPPTSGSLPERGSQIHGLSR 347
V C W D P +G E+GS + ++R
Sbjct: 213 VQDCAMWPDGYPGTGRESEKGSNLEAITR 241
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,426,678
Number of Sequences: 5004
Number of extensions: 51707
Number of successful extensions: 113
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -