Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1036
         (569 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha...    27   2.6  
SPBC725.07 |pex5||peroxisomal targeting signal receptor |Schizos...    27   2.6  
SPCC16C4.05 |||RNase P and RNase MRP subunit |Schizosaccharomyce...    26   3.4  
SPBC1815.01 |eno101|eno1|enolase|Schizosaccharomyces pombe|chr 2...    25   5.9  
SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein Rrp12|Sch...    25   5.9  
SPAC139.06 |hat1|SPAC23C4.01|histone acetyltransferase Hat1|Schi...    25   7.8  

>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 617

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 14/57 (24%), Positives = 31/57 (54%)
 Frame = -3

Query: 405 IKHMCNKLIKYWGVIAR*HSCSIKP*LRFDRFYKKFLVKIYRFTSLDAEQPQQPRLH 235
           ++  CN  ++YWG  ++  + +        RF+ +F+   +R+T +   + Q+PRL+
Sbjct: 513 LEQYCNNGLEYWGSDSQGVNTT-------RRFFLEFMSFFHRYTPIALYEVQRPRLN 562


>SPBC725.07 |pex5||peroxisomal targeting signal receptor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +1

Query: 436 RFLSTYQFYLRVTSSATSEDINLDYFSNKAK 528
           R +S    Y+RV S+    +INL YF + AK
Sbjct: 497 RAVSLQPQYVRVRSNMAVSNINLGYFEDAAK 527


>SPCC16C4.05 |||RNase P and RNase MRP subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 201

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -2

Query: 283 QIHVSRCGAAAATKAAPVWRYVK 215
           ++ +SR GA A    +P+W+Y+K
Sbjct: 127 KLGLSRAGAIAVQDDSPLWKYLK 149


>SPBC1815.01 |eno101|eno1|enolase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 439

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -2

Query: 280 IHVSRCGAAAATKAAPVWRYV 218
           + ++ C A AA K  P+W+Y+
Sbjct: 114 VSMAICRAGAAQKKLPLWKYI 134


>SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein
           Rrp12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1001

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -3

Query: 462 IKLICR*KSQKKCSLLSPKIKHMCNKLIKYW 370
           IKLI +  S++  +L    I  +C+ LI YW
Sbjct: 249 IKLILKVLSERIDALSDAVIYELCDSLIPYW 279


>SPAC139.06 |hat1|SPAC23C4.01|histone acetyltransferase
           Hat1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 378

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 5/56 (8%)
 Frame = +2

Query: 347 ECYRAMTPQYLINLLHICFIFGDRREHF-----FCDFYRHISFICASHPPQHPKIS 499
           + Y A+   +L N   + F   D  E F      CD+ R +S    S P  HP +S
Sbjct: 217 QLYNAIVSTFLKNPKILDFTVEDASEAFDSLRDHCDYKRLLSMGIFSEPDFHPSLS 272


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,247,894
Number of Sequences: 5004
Number of extensions: 46390
Number of successful extensions: 109
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)