Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1036
         (569 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   1.6  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   4.9  
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    21   6.5  
DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein ...    21   6.5  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   6.5  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   6.5  
AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein ...    21   6.5  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   6.5  
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    21   8.6  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    21   8.6  
AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.          21   8.6  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 10/40 (25%), Positives = 19/40 (47%)
 Frame = -3

Query: 270 LDAEQPQQPRLHRSGDM*KRAGNKCNIQEWKGAPKPYARW 151
           ++A+QPQQ +  +     ++   +   Q W    +P A W
Sbjct: 435 INAQQPQQQQQQQQQQQQQQQQQQQQQQHWPMEEEPAASW 474


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = -1

Query: 62  VCSGRFLCTGRWR 24
           +CS  ++C  RWR
Sbjct: 373 ICSNGWICEHRWR 385


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +2

Query: 428 FFCDFYRHISFICA 469
           FFCD    +S +CA
Sbjct: 57  FFCDMSPSLSLLCA 70


>DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein 6
           protein.
          Length = 125

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -3

Query: 426 CSLLSPKIKHMCNKLIKY 373
           C+  + K KH  NK++ Y
Sbjct: 72  CNKCNEKQKHTANKVVNY 89


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 381 LIYYTYVLFSVTGENISFAISIDISV 458
           L   T+ L S +GE ++ +ISI IS+
Sbjct: 261 LTVLTFYLPSDSGEKVTLSISILISL 286


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 381 LIYYTYVLFSVTGENISFAISIDISV 458
           L   T+ L S +GE ++ +ISI IS+
Sbjct: 261 LTVLTFYLPSDSGEKVTLSISILISL 286


>AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein
           protein.
          Length = 125

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -3

Query: 426 CSLLSPKIKHMCNKLIKY 373
           C+  + K KH  NK++ Y
Sbjct: 72  CNKCNEKQKHTANKVVNY 89


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +1

Query: 10  FTDLSRHLPVHKKRPEHT 63
           +TD  + +P+ K  PE T
Sbjct: 211 YTDFLKSVPIFKNLPEET 228


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +2

Query: 428 FFCDFYRHISFICA 469
           FFCD    +S +CA
Sbjct: 56  FFCDMSPLLSLVCA 69


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +2

Query: 215 FHISPDRCSLGCCGCSASRDVNLYIF 292
           F I P+R  LG C  S   +  L  F
Sbjct: 305 FQILPERGELGHCTASVMDENGLQFF 330


>AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.
          Length = 148

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = -2

Query: 454 DMSIEIAKEMFSPVTENKTYV 392
           ++S  ++ E+  PVT + TY+
Sbjct: 46  NVSCSVSWEVHDPVTNSDTYI 66


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,425
Number of Sequences: 438
Number of extensions: 3369
Number of successful extensions: 12
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16381902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)