Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1028
         (686 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...   207   7e-56
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    45   8e-07
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    28   0.096
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   2.7  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   6.3  

>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score =  207 bits (506), Expect = 7e-56
 Identities = 91/97 (93%), Positives = 95/97 (97%)
 Frame = +3

Query: 3   DIWACGVILYILLVGYPPFWDEDQYRLYAQIKAGAYDYPSPEWDTVTPEAKSLINQMLTV 182
           DIWACGVILYILLVGYPPFWDEDQ+RLYAQIK G+YDYPSPEWDTVTPEAK+LINQMLTV
Sbjct: 94  DIWACGVILYILLVGYPPFWDEDQHRLYAQIKTGSYDYPSPEWDTVTPEAKNLINQMLTV 153

Query: 183 NPSKRITASEALKHPWICHRERVASVMHRQETVDCLK 293
           NPSKRITASEALKHPWIC RERVASV+HRQETVDCLK
Sbjct: 154 NPSKRITASEALKHPWICQRERVASVVHRQETVDCLK 190


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 44.8 bits (101), Expect = 8e-07
 Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 7/83 (8%)
 Frame = +3

Query: 3   DIWACGVILYILLVGYPPFWDEDQYRLYAQIKAG--AYDYPSPEWDTVTPEAKSLINQML 176
           D W+ GV+++ LL G PPF   D  + Y  I  G  A ++P     ++T  A +LI ++ 
Sbjct: 547 DYWSLGVLMFELLTGTPPFTGGDPMKTYNIILKGIDAIEFPR----SITRNATALIKKLC 602

Query: 177 TVNPSKRI-----TASEALKHPW 230
             NP++R+       SE  KH W
Sbjct: 603 RDNPAERLGYQKGGISEIQKHKW 625


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 27.9 bits (59), Expect = 0.096
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +3

Query: 51  PPFWDEDQYRLYAQIKAGAYDYPSPEWDTVTPEAKSL 161
           PP W+ D Y+L  +I AG   + +     +  E KS+
Sbjct: 125 PPPWETDSYKLIGRIAAGEGRFNTNTEVVINTEVKSI 161


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
            receptor protein.
          Length = 1040

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 2/66 (3%)
 Frame = -1

Query: 674  KSCHIGIT*LGICVVITIIDCIYQHLSNLNHFRSAQRSITIAPSFSKRVR--FCQGFFVM 501
            +S HIG T    CV+      +Y    N    R    S+TI+ S S  +   F    +++
Sbjct: 846  ESKHIGFTMYTTCVIWLAFVPLYFGTGNNVALRITSMSVTISLSASVTIACLFSPKLYII 905

Query: 500  FFRYNR 483
              R  R
Sbjct: 906  LIRPER 911


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
 Frame = +3

Query: 156 SLINQMLTVNPSKRITASEALK--HPWICHRERVASVMHR--QETVDCLKKFNARRKLKG 323
           SLI Q +  +P K++T +E         C+  R A+      +  +   K F     +KG
Sbjct: 511 SLIRQSIIESPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVENVKG 570

Query: 324 AILT 335
           A+ T
Sbjct: 571 AVWT 574


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,282
Number of Sequences: 438
Number of extensions: 3652
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)