Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1026
         (666 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...   316   9e-89
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    35   6e-04
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   8.0  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   8.0  

>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score =  316 bits (777), Expect = 9e-89
 Identities = 153/221 (69%), Positives = 182/221 (82%)
 Frame = +3

Query: 3   DYMSECTVEILLETAMGVSKSTQDQSGFEYAMAVMKMCDILHLRHTKIWLRPDLLFKFTD 182
           +YMSE TV+ILLETAMGVSK T+D + FEYAMAVMKMCDILHLRHTKIWLRPD LF  T 
Sbjct: 180 NYMSELTVDILLETAMGVSKPTRDHNAFEYAMAVMKMCDILHLRHTKIWLRPDWLFNLTK 239

Query: 183 YAKNQTKLLDIIHGLTKKVIKRKKEEFASGKKPSNLNETATTSEPSTGKLTSVEGLSFGQ 362
           Y KNQ KLL+IIHGLTKKVI+ KKEE+ SGK+ + ++ +A  +E  T  +  VEG+SFGQ
Sbjct: 240 YGKNQIKLLEIIHGLTKKVIQLKKEEYKSGKR-NIIDNSAQKTESKTNNIV-VEGVSFGQ 297

Query: 363 SSGLKXXXXXXXXXGQKKRLAFLDLLLESSQSGVAISDEEIKEQVDTIMFEGHDTTAAGS 542
           S GLK         G+KKR AFLDLL+E+ Q+GV ++D+E+KEQVDTIMFEGHDTTA+GS
Sbjct: 298 SVGLKDDLDIDDDVGEKKRQAFLDLLIEAGQNGVLLTDKEVKEQVDTIMFEGHDTTASGS 357

Query: 543 SFFLSMMGIHQDIQDKVIEELDQIFGDSDRPVTFQDTLEMK 665
           SFFL++MG H DIQ+KVI+ELD+IFGDSDRP TFQDTLEMK
Sbjct: 358 SFFLAVMGCHPDIQEKVIQELDEIFGDSDRPATFQDTLEMK 398


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 35.1 bits (77), Expect = 6e-04
 Identities = 19/85 (22%), Positives = 44/85 (51%), Gaps = 5/85 (5%)
 Frame = +3

Query: 426 FLDLLLESSQS-----GVAISDEEIKEQVDTIMFEGHDTTAAGSSFFLSMMGIHQDIQDK 590
           F+++L+E  ++      + ++D  I  Q       G +T++   S  L  + ++QD+Q K
Sbjct: 270 FINMLMELQKNPQKLENIKLTDSLIAAQAFVFFLAGFETSSTTMSNALYELALNQDVQKK 329

Query: 591 VIEELDQIFGDSDRPVTFQDTLEMK 665
           + EE++     +++ + + D  EM+
Sbjct: 330 LREEINTFCPKNNKELKYDDIKEME 354


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -1

Query: 480 PHRKWPHHFVNSPATDQG 427
           P+R  PH+ V   A  QG
Sbjct: 108 PYRPHPHNLVGKEACKQG 125


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -1

Query: 480 PHRKWPHHFVNSPATDQG 427
           P+R  PH+ V   A  QG
Sbjct: 108 PYRPHPHNLVGKEACKQG 125


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,364
Number of Sequences: 438
Number of extensions: 3999
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20099475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)