Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1022
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    27   2.3  
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    27   3.1  
SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom...    26   4.1  
SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3 |Schi...    26   5.4  
SPAC57A10.02 |cdr2||GIN4 family protein kinase Cdr2|Schizosaccha...    26   5.4  
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe...    25   7.2  

>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 21/61 (34%), Positives = 34/61 (55%)
 Frame = -1

Query: 505  GASQSSAHAMQSLSTPLKRSAKSELVGSANFEMSPSVAGARLASTVTSGRTTTAISSAGG 326
            G+  SS  A+ S S+ ++ +A S +  +A+     S A +  +STVTS  T ++ SSA  
Sbjct: 1089 GSPTSSVTAVSSTSS-VEGTASSTIAAAASAATLSSDAASG-SSTVTSSATASSSSSAAT 1146

Query: 325  T 323
            T
Sbjct: 1147 T 1147



 Score = 26.2 bits (55), Expect = 4.1
 Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
 Frame = -1

Query: 502 ASQSSAHAMQSLSTPLKRSAKSELVGSANFEMSPSVAGARL---ASTVTSGRTTTAISSA 332
           +S S++    S ST    S  S +  S+    SP+ + + L   +S++ SG +++ +SS+
Sbjct: 595 SSSSTSSTFSSASTSSPSSISSSISSSSTILSSPTPSTSSLMISSSSIISG-SSSILSSS 653

Query: 331 GGTICLSS 308
             TI +SS
Sbjct: 654 ISTIPISS 661


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 17/68 (25%), Positives = 32/68 (47%)
 Frame = -1

Query: 511 GEGASQSSAHAMQSLSTPLKRSAKSELVGSANFEMSPSVAGARLASTVTSGRTTTAISSA 332
           G G  Q++  +    ST    S+ S    S     SPS + +  +S+ +S  ++++ SS+
Sbjct: 119 GNGVLQTTVSSSSVSSTTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSS 178

Query: 331 GGTICLSS 308
             +   SS
Sbjct: 179 SSSSSSSS 186


>SPCC132.01c ||SPCC1322.17c|DUF814 family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1021

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +3

Query: 183 DEPFRRDHYRPLLRHYHDQLAMALRRLDIAVDD 281
           DE F     + L +  HD+LA A RRL+ A +D
Sbjct: 342 DEFFSSIEAQKLKKRAHDRLATAERRLESAKED 374


>SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 970

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 491 ALTRALAAPPHTHLS*LADISTICRRHH 574
           A+ R  AAPP T+   L DI  +C+  H
Sbjct: 715 AVLRRHAAPPLTNFDSLQDILRVCKGMH 742


>SPAC57A10.02 |cdr2||GIN4 family protein kinase
           Cdr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
 Frame = +3

Query: 93  QELETMVVDYQTVHAGCPAADLLYYVLLGTDEPF-RRDHYRPLLRHYHDQLAMALRRLDI 269
           Q ++ ++V + ++   C    +  Y  L +  P   +  Y  L RH H   + A+ R   
Sbjct: 280 QPIDPLIVQHLSLVFRCSDDPMPLYEKLASQSPLVEKTLYTLLSRHLHPPSSAAVDRNRA 339

Query: 270 AVDDV 284
            VDD+
Sbjct: 340 VVDDL 344


>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 349

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = -1

Query: 493 SSAHAMQSLSTPLKRSAKSELVGSANFEMSPSVAGARLASTVTSGRTTT 347
           SS  +  S +TP   S+ S    S++   S S + +  +S+ +S RTT+
Sbjct: 130 SSTTSSSSSATPSTTSSSSSSSSSSSSSSSKSSSSSSKSSSRSSSRTTS 178


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,654,779
Number of Sequences: 5004
Number of extensions: 25950
Number of successful extensions: 85
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)