Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1015
         (631 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC646.06c |agn2||glucan endo-1,3-alpha-glucosidase Agn2|Schizo...    28   0.97 
SPBC1773.08c |||mannosyltransferase complex subunit |Schizosacch...    28   0.97 
SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces pom...    26   5.2  
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    25   6.8  

>SPBC646.06c |agn2||glucan endo-1,3-alpha-glucosidase
           Agn2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 433

 Score = 28.3 bits (60), Expect = 0.97
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = -3

Query: 323 PI*VLKNKNGILHNYNFCTLKFN 255
           P+ +L N + +L+N+NFCT + +
Sbjct: 410 PLNILGNNSVVLYNFNFCTTRIS 432


>SPBC1773.08c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 391

 Score = 28.3 bits (60), Expect = 0.97
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -3

Query: 164 GYRHTSQNDCHHPAKWY-CDCSVVEQIRLLTSTSHPTSSQW 45
           GYRH+   D HH  +   C+C  + ++  + STS    +QW
Sbjct: 343 GYRHS---DIHHCGQSLGCNCECIPELSEIESTSGGCVTQW 380


>SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 453

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = -2

Query: 582 EHI*KKS*YHKNYFTGGRASFELARMGRYYHTAMK 478
           EH+  +S YHK YF G    F      +  HT  +
Sbjct: 34  EHLTSRSPYHKPYFYGPSIDFPTTCKIKQVHTLQR 68


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -3

Query: 470  SFRFERLEQLSTPKLRLRTHVPRWVAAFTLLSSVGTDNHL 351
            +  F + +Q +T ++R    VPR  A   L   + +DNH+
Sbjct: 910  NLNFLKSKQETTQRIRESAKVPRTSAGNHLSEKLNSDNHI 949


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,616,206
Number of Sequences: 5004
Number of extensions: 52037
Number of successful extensions: 101
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)