Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1012
         (691 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase |Schizo...    29   0.84 
SPCC191.01 ||SPCC417.13|sequence orphan|Schizosaccharomyces pomb...    28   1.1  
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc...    27   1.9  
SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol...    27   2.6  
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex...    27   3.4  
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    26   5.9  
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    26   5.9  
SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyc...    25   7.8  

>SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 28.7 bits (61), Expect = 0.84
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 584 WIRLMRRCFEHYAEYTTNVYSKSK 655
           W++ +   FE+YAE TT  Y ++K
Sbjct: 786 WMKTVSEIFEYYAERTTGAYVENK 809


>SPCC191.01 ||SPCC417.13|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 178

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +1

Query: 514 ERSTHHDLESRITGSPIHFGSSGVDPANEKVFRALCGI 627
           +RS  H   S  T +P     S +DPA   ++R  C +
Sbjct: 95  QRSASHGSTSSATSTPKRLSISSMDPARIHLWRQFCNV 132


>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 438

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +2

Query: 170 SLDRENKCLICSHSCKISFSSIIN*LFVKSSPIFQPVFK 286
           SLD EN   +   S   +    +N LF +S PI +PV K
Sbjct: 7   SLDNENTSFVGKLSSSSNVDPTLNLLFSQSKPIPKPVAK 45


>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 797

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -3

Query: 467 NALLPIHTEITESVEFCLAMDGVTRATTATNSRLSSKLH 351
           N  +P H ++T  V +C+   GV    T    R S +LH
Sbjct: 151 NFTIPAHNDLTHGVHYCIWETGVVYHPTMLKER-SYELH 188


>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
           subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 342

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/47 (25%), Positives = 25/47 (53%)
 Frame = -3

Query: 509 LIQQQSFAILTGCSNALLPIHTEITESVEFCLAMDGVTRATTATNSR 369
           +I  ++ A+     NAL  +  + T++V FC+  + + + + A  SR
Sbjct: 124 IILDEADAMTLAAQNALRRVIEKYTKNVRFCIICNYINKISPAIQSR 170


>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1666

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +2

Query: 464 RWSSQSGSQKIAVEST*NDPRITILNRGSRDRR 562
           R SS +G+Q I+ +S  N+   T++   SRD R
Sbjct: 143 RHSSLNGTQIISYKSNYNEEWFTLIGISSRDNR 175


>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1036

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 20/77 (25%), Positives = 30/77 (38%), Gaps = 2/77 (2%)
 Frame = +3

Query: 234 SSINSL*SRVPYSNRFLKIVLTHYCLFRFRNFCRKYISKM*LAAETAIRRRRCTCDSIHS 413
           S IN   + +P+  R  + +L  Y   R  N C    S   L+ E  +R  R    + HS
Sbjct: 676 SVINQQLADIPFQKRDAEFILPSYFDIRLYNDCSLKYSLNTLSQEKILRELRDKLQNDHS 735

Query: 414 Q--TKFN*FSNFSMDRQ 458
                F    N+ +  Q
Sbjct: 736 SIFDAFQKMRNYMLQHQ 752


>SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1088

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 294 LTHYCLFRFRNFCRKYISKM 353
           L H  L RFRN C  Y+S +
Sbjct: 694 LLHTLLVRFRNHCSDYLSDL 713


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,619,781
Number of Sequences: 5004
Number of extensions: 49426
Number of successful extensions: 105
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)