Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1012
         (691 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0391 + 2838471-2838794,2838892-2839028,2841155-2841631,284...    30   2.0  
10_06_0134 - 11090065-11091639                                         28   8.0  
04_04_1701 + 35470535-35471170,35471254-35471403,35471745-354720...    28   8.0  

>02_01_0391 +
           2838471-2838794,2838892-2839028,2841155-2841631,
           2841719-2841999,2843009-2843051,2844094-2844148,
           2845771-2845824,2846282-2846314,2846574-2846621,
           2846885-2846950,2847286-2847426
          Length = 552

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = +3

Query: 207 IRAKLASA-PSSINSL*SRVPYSNRFLKIVLTHYCLFRFRNFCRKYIS 347
           I  KLA   P   N + S++PY   +L IV+++  L R+ N  R+Y+S
Sbjct: 324 IMGKLAQEQPRLKNQIISKLPYDGIWLGIVISNRFLRRWLNSHREYVS 371


>10_06_0134 - 11090065-11091639
          Length = 524

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 98  QATKAPLCVTKKPTTNGSHAARSARS 21
           QA +AP C  +  + NG+H A S+ S
Sbjct: 42  QAFEAPYCTLESSSANGAHPAHSSAS 67


>04_04_1701 +
           35470535-35471170,35471254-35471403,35471745-35472015,
           35472152-35472262,35472476-35472650,35472748-35473020,
           35473251-35473494,35473623-35473708,35473752-35473968
          Length = 720

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -3

Query: 98  QATKAPLCVTKKPTTNGSHAARSARSPP 15
           +  +  + + +KPT N  + ARSA +PP
Sbjct: 409 RVNRVGIAIFRKPTDNSCYEARSAANPP 436


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,091,415
Number of Sequences: 37544
Number of extensions: 321391
Number of successful extensions: 775
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 775
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)