Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1007
         (684 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0847 - 6451525-6451678,6452870-6453066,6454300-6454591,645...    30   1.5  
01_01_0205 + 1764034-1767601,1767934-1767944                           28   7.9  

>06_01_0847 -
           6451525-6451678,6452870-6453066,6454300-6454591,
           6454622-6454654,6454869-6455102,6455204-6455259,
           6455552-6456754
          Length = 722

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
 Frame = -1

Query: 633 PRYYIDGTYVNTTDSISNM-TNLFNVYNIPPFYIELNNMLSILCFLHCNCCAHP*YRNAF 457
           P   +DG YV TT+ +  + T+  +      F+I L NM++I   + C   A P  R  F
Sbjct: 503 PIVMVDG-YVRTTEELQRVETHELSREEKLAFFINLYNMMAIHALVTCGHPAGPLDRRKF 561

Query: 456 LPEYK 442
             ++K
Sbjct: 562 FGDFK 566


>01_01_0205 + 1764034-1767601,1767934-1767944
          Length = 1192

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
 Frame = -1

Query: 669 INVLPELVNL*SPRYYIDGTYVNTTDSISNMTNLFNVY-NIP----PFYIELNNMLSILC 505
           ++ + +LV+L S       TY +   SI N+TNL ++Y N P    P    + N+ S+  
Sbjct: 447 MSAIGDLVDLQSLDMSNCNTYSSMPSSIGNLTNLKSLYINSPGFLGPMPAAIGNLKSLKS 506

Query: 504 FLHCNC 487
            +  NC
Sbjct: 507 MVFSNC 512


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,557,390
Number of Sequences: 37544
Number of extensions: 281379
Number of successful extensions: 426
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 426
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)