Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1007
         (684 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025453-1|AAK31407.1|  520|Caenorhabditis elegans Hypothetical ...    29   2.3  
Z81116-6|CAB03299.1|  416|Caenorhabditis elegans Hypothetical pr...    28   7.1  
AC024880-2|AAF60914.4|  665|Caenorhabditis elegans Hypothetical ...    28   7.1  
AC024880-1|AAR12985.1|  634|Caenorhabditis elegans Hypothetical ...    28   7.1  

>AF025453-1|AAK31407.1|  520|Caenorhabditis elegans Hypothetical
           protein C08F1.4a protein.
          Length = 520

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = -2

Query: 320 IYLFCHQEDIITCRTLQ*KCQFMLI 246
           +YLFC ++D ++ + +Q KC F L+
Sbjct: 238 LYLFCDEDDNVSKKLIQTKCTFNLV 262


>Z81116-6|CAB03299.1|  416|Caenorhabditis elegans Hypothetical
           protein T06C12.7 protein.
          Length = 416

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = -1

Query: 501 LHCNCCAHP*YRNAFL--PEYKNRQRHVGTC 415
           L C  CA   +R +F+   EYK RQR+VG C
Sbjct: 43  LSCRACA-AFFRRSFVHKKEYKCRQRNVGKC 72


>AC024880-2|AAF60914.4|  665|Caenorhabditis elegans Hypothetical
           protein Y97E10AR.2a protein.
          Length = 665

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/16 (75%), Positives = 12/16 (75%)
 Frame = -2

Query: 503 SCTVTAAPTLSIGTHF 456
           SC VT A TLSIG HF
Sbjct: 536 SCIVTRAETLSIGDHF 551


>AC024880-1|AAR12985.1|  634|Caenorhabditis elegans Hypothetical
           protein Y97E10AR.2b protein.
          Length = 634

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/16 (75%), Positives = 12/16 (75%)
 Frame = -2

Query: 503 SCTVTAAPTLSIGTHF 456
           SC VT A TLSIG HF
Sbjct: 486 SCIVTRAETLSIGDHF 501


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,597,577
Number of Sequences: 27780
Number of extensions: 296898
Number of successful extensions: 611
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)