Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1007
         (684 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    23   3.6  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   8.3  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   8.3  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   8.3  

>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +2

Query: 107 SNFATKEMLPCSCHKIAIDVLNKFEIL 187
           SN  T+ MLP    K+ +  + + E+L
Sbjct: 61  SNKKTRHMLPTGFRKVLVHNVKELEVL 87


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -1

Query: 543 FYIELNNMLSILCFLHCNCCAH 478
           FY+    ML I C L+C    H
Sbjct: 201 FYVPCIVMLGIYCRLYCYAQKH 222


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = -1

Query: 663 VLPELVNL*SPRYYIDGTYVNTTDSISNMTNLFNVY 556
           V+  +V L  PRY + G  VNT   +   +    ++
Sbjct: 526 VVAGIVGLKMPRYCLFGDSVNTASRMEATSQAMQIH 561


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +3

Query: 438 YFCIQVEMRSYTKGGRSSYSARNKEYL 518
           YF    E     KG R++Y A   E+L
Sbjct: 555 YFIFDAEKTGLGKGPRTTYCAFWNEFL 581


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,961
Number of Sequences: 438
Number of extensions: 4178
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)