Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1005
         (683 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca...    29   0.63 
SPCC613.03 |||conserved fungal protein|Schizosaccharomyces pombe...    29   0.63 
SPAC29A4.20 |||RNA polymerase II elongator complex, histone acet...    26   5.8  
SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosacch...    26   5.8  
SPCC777.07 |||alpha-1,2-mannosyltransferase |Schizosaccharomyces...    25   7.7  

>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
           cancers-1 homolog 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 676

 Score = 29.1 bits (62), Expect = 0.63
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -1

Query: 278 FKRYLIFVIKCPLYLILATRPRFASETLNF 189
           FKR ++  + C L+L+L  +PRF  E +NF
Sbjct: 347 FKRCVVESL-CFLFLLLTNQPRFTDELVNF 375


>SPCC613.03 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 189

 Score = 29.1 bits (62), Expect = 0.63
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -3

Query: 366 KHAHHLNIYINIFFFK*HILYIKGRKGYW 280
           K  HH++ Y +  FF+ H L   G+KGYW
Sbjct: 28  KDEHHIDKYTDESFFRLHDL---GKKGYW 53


>SPAC29A4.20 |||RNA polymerase II elongator complex, histone
           acetyltransferase subunit |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 544

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +1

Query: 190 KFNVSEAKRGRVANIK*SGHLITKIKYRLKPIAFSS 297
           +++  E  RGRV  ++  GH + K++Y +    F S
Sbjct: 138 RYDPYEQARGRVEQLRSLGHTVDKVEYIIMGGTFMS 173


>SPAC343.17c |||WD repeat protein, human WDR70
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 576

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = -2

Query: 655 GGGHIHFASRPIFALPGLSLDTQAHISTDVKPTLKSA 545
           G   ++    P+F L  ++LDT+A +  D K T+ ++
Sbjct: 361 GSTAVNSMKAPLFVLDAMTLDTKATLFFDSKSTVTAS 397


>SPCC777.07 |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 378

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
 Frame = -1

Query: 464 RCQCDPTLTYSILPLNSQLSTF-NIN 390
           RC CDPT T   LP +  +    NIN
Sbjct: 352 RCLCDPTGTIDYLPFSCAIKWLENIN 377


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,364,825
Number of Sequences: 5004
Number of extensions: 41664
Number of successful extensions: 90
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)