Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1003
         (605 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosacch...    26   4.9  
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf...    26   4.9  
SPAC3H1.04c |mdm31||mitochondrial inner membrane protein Mdm31|S...    25   6.5  
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac...    25   8.6  

>SPAC343.17c |||WD repeat protein, human WDR70
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 576

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -3

Query: 540 NIYNSAHHVSEVTS*CCRP 484
           N+YN+  H++E+T  C +P
Sbjct: 189 NMYNTKGHIAEITDGCWQP 207


>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
            Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1339

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +3

Query: 51   RAKAEIDVIGEKVGEWGIGEGEWTDEQRH 137
            + K +I ++G K  E+G+ EG  T    H
Sbjct: 1197 QGKLQISIVGSKFNEYGLSEGYRTRLLEH 1225


>SPAC3H1.04c |mdm31||mitochondrial inner membrane protein
           Mdm31|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 3/26 (11%)
 Frame = -1

Query: 179 ENVRVFLFE---FCRFPVTLFVCPLP 111
           E++RV L +   F +FPV++F C LP
Sbjct: 328 EDLRVTLLQPKGFRKFPVSVFFCELP 353


>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
            Hip3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1630

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = +1

Query: 199  SSRTCKQTDVSQPWQSRGVIISCITCYLNTARGSQ 303
            S   C++ D    W++   I+ C+ C  N   GS+
Sbjct: 917  SQTECQRLDA---WENENEILQCVCCRFNLIIGSE 948


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,117,449
Number of Sequences: 5004
Number of extensions: 40611
Number of successful extensions: 101
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)