Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1003
         (605 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0358 - 17948460-17948687,17949442-17949534                       28   5.0  
05_03_0179 - 9257066-9258946                                           28   6.6  
01_01_0316 + 2565704-2566134,2566682-2566845,2566989-2567152,256...    28   6.6  
12_02_0201 + 15456805-15457154,15457246-15457450,15457959-15457994     27   8.7  
10_08_0127 - 15010125-15011068,15011328-15011835                       27   8.7  
03_06_0697 + 35607040-35607417                                         27   8.7  

>12_02_0358 - 17948460-17948687,17949442-17949534
          Length = 106

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -1

Query: 269 MHEIITPRL--CQGCDTSVCLHVLELSVSV*HENVRVFLF 156
           M E++ PR+  C  C   VCLH   +S +    N R FLF
Sbjct: 1   MAELVGPRVYSCCNCRNHVCLHDDIISKAFQGRNGRAFLF 40


>05_03_0179 - 9257066-9258946
          Length = 626

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +1

Query: 187 TETDSSRTCKQTDVSQPW-QSRGVIISCITCYLNTARGSQ 303
           TE +S  T +QT  + PW   + + +  +TCY    R S+
Sbjct: 320 TEVNSKFTLRQTSFNNPWFGHQAISVVYLTCYSCLDRSSE 359


>01_01_0316 +
           2565704-2566134,2566682-2566845,2566989-2567152,
           2567594-2567720,2568347-2568450
          Length = 329

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +3

Query: 69  DVIGEKVGEWGIGEGEWTDEQRHRKPTEFEKENPNI 176
           D IG  VGE    +G W + +  R   +  KENP I
Sbjct: 103 DAIGGDVGEGAASQGCWLEPELGRFAFQSYKENPLI 138


>12_02_0201 + 15456805-15457154,15457246-15457450,15457959-15457994
          Length = 196

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
 Frame = +3

Query: 81  EKVGEWGI--GEGEWTDEQRHRKPTEFEKEN 167
           EKVGEW I  G GE+T+ + + K    +KE+
Sbjct: 135 EKVGEWSIVGGTGEFTNARGNIKYRAIKKED 165


>10_08_0127 - 15010125-15011068,15011328-15011835
          Length = 483

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 90  GEWGIGEGEWTDEQRHRKPTEFEKEN 167
           G  G+G G   DE RHR P+ F +++
Sbjct: 375 GVGGVGGGSADDEHRHRLPSFFPQQD 400


>03_06_0697 + 35607040-35607417
          Length = 125

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 9/31 (29%), Positives = 20/31 (64%)
 Frame = +3

Query: 48  QRAKAEIDVIGEKVGEWGIGEGEWTDEQRHR 140
           + A++ +  +G++ G WG+G G W + +R +
Sbjct: 24  EMAESAVFTVGDR-GGWGMGAGSWANGKRFK 53


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,958,044
Number of Sequences: 37544
Number of extensions: 239923
Number of successful extensions: 570
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 570
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)