Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1003
         (605 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   7.1  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   7.1  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   9.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   9.4  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 223 DVSQPWQSRGVIISCITCYLNTARG 297
           D+S  W+S    I  +  YLNT +G
Sbjct: 191 DLSDYWKSGTWDIINVPAYLNTYKG 215


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +2

Query: 269 LLATSIRHVEVKHVNT**MKYLLSLVDV 352
           ++   I+H+  +H     MK LLS  D+
Sbjct: 216 IILEDIKHINTRHNTKNGMKTLLSETDI 243


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
 Frame = +3

Query: 18   FAKHDNEVERQRAKAEIDVIGEKVGEWGIGEGEW--TDEQRH 137
            F  H     R  A    + +G+   EW  G+GE   TD  R+
Sbjct: 1319 FGGHVVRPWRGSATLACNAVGDPTREWYKGQGEQIRTDSTRN 1360


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
 Frame = +3

Query: 18   FAKHDNEVERQRAKAEIDVIGEKVGEWGIGEGEW--TDEQRH 137
            F  H     R  A    + +G+   EW  G+GE   TD  R+
Sbjct: 1315 FGGHVVRPWRGSATLACNAVGDPTREWYKGQGEQIRTDSTRN 1356


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,820
Number of Sequences: 438
Number of extensions: 2779
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17848938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)