Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1002
         (625 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1773.08c |||mannosyltransferase complex subunit |Schizosacch...    29   0.41 
SPBC32H8.08c |||mannosyltransferase complex subunit |Schizosacch...    28   1.3  
SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces po...    27   2.2  
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos...    27   2.2  
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    26   3.8  
SPAC824.09c |||GTPase activating protein |Schizosaccharomyces po...    26   3.8  
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch...    26   5.1  
SPAC2C4.09 |||DUF1640 family protein|Schizosaccharomyces pombe|c...    26   5.1  
SPAC31G5.15 |||phosphatidylserine decarboxylase |Schizosaccharom...    25   8.9  

>SPBC1773.08c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 391

 Score = 29.5 bits (63), Expect = 0.41
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = -3

Query: 194 YFRYGRHVSITCDIRYFVYYYFNEDLLKVIYLSLISCARFK-TITSVFRVRNQLKLVYSL 18
           Y+R    V+ TCDI Y  +YY  E+    IY  +++    + T+ ++FR  +  +   +L
Sbjct: 166 YWRVEPDVAFTCDISYDPFYYMEEN--GKIYGYVVALKELEDTVPNLFRYTSAYRRNNNL 223

Query: 17  VPN 9
             N
Sbjct: 224 TSN 226


>SPBC32H8.08c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = -3

Query: 194 YFRYGRHVSITCDIRYFVYYYFNEDLLKVIYLSLISCARF-KTITSVFR 51
           Y+R    V+ +CDI Y  +YY   D    +Y  +I+     KT+ ++FR
Sbjct: 222 YWRLEPEVTFSCDISYDPFYYM--DKHNKVYGYVIAIKELAKTVPNLFR 268


>SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 635

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 17/42 (40%), Positives = 19/42 (45%)
 Frame = -2

Query: 324 HTNSTIFSECT*LNPCYHLKYRSVTRGTTALGRRRIFLHLTD 199
           HT S IFS    +NPCY        R     G+  I LH TD
Sbjct: 5   HTFSLIFSLLFVINPCYSATLPLAIRRELTWGQVNI-LHTTD 45


>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
           Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 10/17 (58%), Positives = 10/17 (58%), Gaps = 2/17 (11%)
 Frame = +3

Query: 477 HHHPHV--PRHRLQPHF 521
           HHHPH   P H   PHF
Sbjct: 168 HHHPHTRPPHHPPHPHF 184


>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 5/39 (12%)
 Frame = -3

Query: 389 TFTASSY-----TATRDTATAPYTLKITQIPLSSQNAPN 288
           T T SSY     T+   T   PYT  +   P ++ +APN
Sbjct: 96  TVTVSSYWSLVSTSVTGTVYVPYTSSVACFPYATSDAPN 134


>SPAC824.09c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 320

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 12/20 (60%), Positives = 12/20 (60%)
 Frame = +3

Query: 312 WNLCDF*CIRCGGGISSRGV 371
           WNL  F CIRC G   S GV
Sbjct: 42  WNLGVFICIRCSGVHRSLGV 61


>SPBC1271.15c |||translation initiation factor
           IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 686

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 477 HHHPHVPRHRLQPHFLPQRAGPRHA 551
           ++HP+ P+ RLQ HF    + P HA
Sbjct: 54  NNHPNGPQLRLQTHFF-HSSSPMHA 77


>SPAC2C4.09 |||DUF1640 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 216

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 12/59 (20%), Positives = 27/59 (45%)
 Frame = -1

Query: 322 HKFHYLLRMHLIESMLSFKISISHTRHHGFRATPYIFTFNR*DIFDTAVTSRLRAIFDI 146
           H+F  L R   +  + S  ++  + ++HGF +  ++       I D    + +R I ++
Sbjct: 12  HQFQPLFRARTVHKVRSLGLNGFYRKYHGFNSLRFVRVLQEAGIDDKKSETLMRLISNV 70


>SPAC31G5.15 |||phosphatidylserine decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 980

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 128 NEDLLKVIYLSLISCARFKTITSVFR 51
           N DLL  ++L +IS +    + +VFR
Sbjct: 275 NSDLLGFVFLEIISVSNLPPLKNVFR 300


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,262,747
Number of Sequences: 5004
Number of extensions: 41497
Number of successful extensions: 100
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)