Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG1002
         (625 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ178242-1|ABA18181.1|  578|Caenorhabditis elegans Frizzled homo...    89   2e-18
AF016413-2|ABA54421.1|  578|Caenorhabditis elegans Caenorhabditi...    89   2e-18
AF016413-1|ABA54422.1|  550|Caenorhabditis elegans Caenorhabditi...    89   2e-18
AB026113-1|BAA84678.1|  550|Caenorhabditis elegans Cfz2 protein.       89   2e-18
Z81128-1|CAB03398.1|  568|Caenorhabditis elegans Hypothetical pr...    70   2e-12
AF013953-1|AAC47750.1|  568|Caenorhabditis elegans mom-5 protein.      70   2e-12
U43316-1|AAC46993.1|  525|Caenorhabditis elegans transmembrane r...    56   2e-08
AC006736-2|AAF60493.1|  529|Caenorhabditis elegans Abnormal cell...    56   2e-08
AC006736-1|AAF60492.1|  525|Caenorhabditis elegans Abnormal cell...    56   2e-08
U63557-1|AAC47301.1|  558|Caenorhabditis elegans transmembrane r...    42   3e-04
AC024201-2|AAK82924.1|  556|Caenorhabditis elegans Abnormal cell...    42   3e-04
AC024201-1|AAF36028.1|  558|Caenorhabditis elegans Abnormal cell...    42   3e-04
AC084197-27|AAG23467.2|  314|Caenorhabditis elegans Hypothetical...    37   0.010
AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of e...    29   2.7  
U55363-2|AAA97961.3|  357|Caenorhabditis elegans Serpentine rece...    28   4.7  
Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical pr...    27   8.2  
Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical p...    27   8.2  

>DQ178242-1|ABA18181.1|  578|Caenorhabditis elegans Frizzled homolog
           protein.
          Length = 578

 Score = 89.4 bits (212), Expect = 2e-18
 Identities = 35/56 (62%), Positives = 47/56 (83%)
 Frame = +1

Query: 457 QQPRCQDITIPMCRGIGYNLTSFPNALDHDTQEEAGLEVHQYWPLVEIKCSSDLKF 624
           ++ +C+ ITIP+C+GIGYN+TSFPN+  H+ QEEAGLEVHQ++PLVE+ C   LKF
Sbjct: 21  KRQKCEQITIPLCKGIGYNMTSFPNSYGHEKQEEAGLEVHQFYPLVEVGCFQHLKF 76


>AF016413-2|ABA54421.1|  578|Caenorhabditis elegans Caenorhabditis
           frizzled homologprotein 2, isoform a protein.
          Length = 578

 Score = 89.4 bits (212), Expect = 2e-18
 Identities = 35/56 (62%), Positives = 47/56 (83%)
 Frame = +1

Query: 457 QQPRCQDITIPMCRGIGYNLTSFPNALDHDTQEEAGLEVHQYWPLVEIKCSSDLKF 624
           ++ +C+ ITIP+C+GIGYN+TSFPN+  H+ QEEAGLEVHQ++PLVE+ C   LKF
Sbjct: 21  KRQKCEQITIPLCKGIGYNMTSFPNSYGHEKQEEAGLEVHQFYPLVEVGCFQHLKF 76


>AF016413-1|ABA54422.1|  550|Caenorhabditis elegans Caenorhabditis
           frizzled homologprotein 2, isoform b protein.
          Length = 550

 Score = 89.4 bits (212), Expect = 2e-18
 Identities = 35/56 (62%), Positives = 47/56 (83%)
 Frame = +1

Query: 457 QQPRCQDITIPMCRGIGYNLTSFPNALDHDTQEEAGLEVHQYWPLVEIKCSSDLKF 624
           ++ +C+ ITIP+C+GIGYN+TSFPN+  H+ QEEAGLEVHQ++PLVE+ C   LKF
Sbjct: 21  KRQKCEQITIPLCKGIGYNMTSFPNSYGHEKQEEAGLEVHQFYPLVEVGCFQHLKF 76


>AB026113-1|BAA84678.1|  550|Caenorhabditis elegans Cfz2 protein.
          Length = 550

 Score = 89.4 bits (212), Expect = 2e-18
 Identities = 35/56 (62%), Positives = 47/56 (83%)
 Frame = +1

Query: 457 QQPRCQDITIPMCRGIGYNLTSFPNALDHDTQEEAGLEVHQYWPLVEIKCSSDLKF 624
           ++ +C+ ITIP+C+GIGYN+TSFPN+  H+ QEEAGLEVHQ++PLVE+ C   LKF
Sbjct: 21  KRQKCEQITIPLCKGIGYNMTSFPNSYGHEKQEEAGLEVHQFYPLVEVGCFQHLKF 76


>Z81128-1|CAB03398.1|  568|Caenorhabditis elegans Hypothetical
           protein T23D8.1 protein.
          Length = 568

 Score = 69.7 bits (163), Expect = 2e-12
 Identities = 27/52 (51%), Positives = 38/52 (73%)
 Frame = +1

Query: 466 RCQDITIPMCRGIGYNLTSFPNALDHDTQEEAGLEVHQYWPLVEIKCSSDLK 621
           +C+ ITIPMC+ + YN T FPN L H TQ EAG  + Q+ PL+++KCS D++
Sbjct: 36  KCEHITIPMCKNLDYNQTVFPNLLGHTTQSEAGPAIAQFNPLIKVKCSEDIR 87


>AF013953-1|AAC47750.1|  568|Caenorhabditis elegans mom-5 protein.
          Length = 568

 Score = 69.7 bits (163), Expect = 2e-12
 Identities = 27/52 (51%), Positives = 38/52 (73%)
 Frame = +1

Query: 466 RCQDITIPMCRGIGYNLTSFPNALDHDTQEEAGLEVHQYWPLVEIKCSSDLK 621
           +C+ ITIPMC+ + YN T FPN L H TQ EAG  + Q+ PL+++KCS D++
Sbjct: 36  KCEHITIPMCKNLDYNQTVFPNLLGHTTQSEAGPAIAQFNPLIKVKCSEDIR 87


>U43316-1|AAC46993.1|  525|Caenorhabditis elegans transmembrane
           receptor protein.
          Length = 525

 Score = 56.0 bits (129), Expect = 2e-08
 Identities = 23/53 (43%), Positives = 33/53 (62%)
 Frame = +1

Query: 466 RCQDITIPMCRGIGYNLTSFPNALDHDTQEEAGLEVHQYWPLVEIKCSSDLKF 624
           RCQ +   MC  + YNLTSFPN +D ++ ++A   +  Y PL+ + CS  LKF
Sbjct: 25  RCQKVDHEMCNDLPYNLTSFPNLVDEESWKDASESILTYKPLLSVVCSEQLKF 77


>AC006736-2|AAF60493.1|  529|Caenorhabditis elegans Abnormal cell
           migration protein1, isoform b protein.
          Length = 529

 Score = 56.0 bits (129), Expect = 2e-08
 Identities = 23/53 (43%), Positives = 33/53 (62%)
 Frame = +1

Query: 466 RCQDITIPMCRGIGYNLTSFPNALDHDTQEEAGLEVHQYWPLVEIKCSSDLKF 624
           RCQ +   MC  + YNLTSFPN +D ++ ++A   +  Y PL+ + CS  LKF
Sbjct: 25  RCQKVDHEMCNDLPYNLTSFPNLVDEESWKDASESILTYKPLLSVVCSEQLKF 77


>AC006736-1|AAF60492.1|  525|Caenorhabditis elegans Abnormal cell
           migration protein1, isoform a protein.
          Length = 525

 Score = 56.0 bits (129), Expect = 2e-08
 Identities = 23/53 (43%), Positives = 33/53 (62%)
 Frame = +1

Query: 466 RCQDITIPMCRGIGYNLTSFPNALDHDTQEEAGLEVHQYWPLVEIKCSSDLKF 624
           RCQ +   MC  + YNLTSFPN +D ++ ++A   +  Y PL+ + CS  LKF
Sbjct: 25  RCQKVDHEMCNDLPYNLTSFPNLVDEESWKDASESILTYKPLLSVVCSEQLKF 77


>U63557-1|AAC47301.1|  558|Caenorhabditis elegans transmembrane
           receptor LIN-17 protein.
          Length = 558

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = +1

Query: 466 RCQDITIPMCRGIGYNLTSFPNALDHDTQEEAGLEVHQYWPLVEIKCSSDLKF 624
           +C  I I +C+ + YN T FPN + H+ Q         + PL++ KC   + F
Sbjct: 27  KCIPIDIELCKDLPYNYTYFPNTILHNDQHTLQTHTEHFKPLMKTKCHPHIHF 79


>AC024201-2|AAK82924.1|  556|Caenorhabditis elegans Abnormal cell
           lineage protein 17,isoform b protein.
          Length = 556

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = +1

Query: 466 RCQDITIPMCRGIGYNLTSFPNALDHDTQEEAGLEVHQYWPLVEIKCSSDLKF 624
           +C  I I +C+ + YN T FPN + H+ Q         + PL++ KC   + F
Sbjct: 27  KCIPIDIELCKDLPYNYTYFPNTILHNDQHTLQTHTEHFKPLMKTKCHPHIHF 79


>AC024201-1|AAF36028.1|  558|Caenorhabditis elegans Abnormal cell
           lineage protein 17,isoform a protein.
          Length = 558

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = +1

Query: 466 RCQDITIPMCRGIGYNLTSFPNALDHDTQEEAGLEVHQYWPLVEIKCSSDLKF 624
           +C  I I +C+ + YN T FPN + H+ Q         + PL++ KC   + F
Sbjct: 27  KCIPIDIELCKDLPYNYTYFPNTILHNDQHTLQTHTEHFKPLMKTKCHPHIHF 79


>AC084197-27|AAG23467.2|  314|Caenorhabditis elegans Hypothetical
           protein Y73B6BL.21 protein.
          Length = 314

 Score = 37.1 bits (82), Expect = 0.010
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = +1

Query: 463 PRCQDI--TIPMCRGIGYNLTSFPNALDHDTQEEAGLEVHQYWPLVEIKCSSD 615
           P+C DI   + +C GI Y     PN L+H+T  EA      +  L+ + C  D
Sbjct: 35  PKCVDIPSNLSICNGIEYTQMRLPNILEHETVSEAIHASKDWESLLRLNCHPD 87


>AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of efl-1
            mutant phenotypeprotein 1 protein.
          Length = 4177

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -2

Query: 261  RSVTRGTTALGRRRIFLHLTDEIFSIRPSRLDYVR 157
            R + RGTT  G   +     D IF IRPS + + R
Sbjct: 2684 RMLVRGTTTHGDGGVHTSFFDHIFDIRPSNVAFSR 2718


>U55363-2|AAA97961.3|  357|Caenorhabditis elegans Serpentine
           receptor, class h protein28 protein.
          Length = 357

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -3

Query: 191 FRYGRHVSITCDIRYFVYYYFNEDLLKVIYLSLIS 87
           F YG ++S  C +  F   Y N+D  K  +  L++
Sbjct: 152 FVYGTYISSVCSLSNFALLYENQDNAKFFWYKLLA 186


>Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical protein
            ZK945.9 protein.
          Length = 3178

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -3

Query: 149  YFVYYYFNEDLLKVIYLSLISCARFKTITSVFRVRNQLKLVYSL 18
            Y + Y F   L+ V  +      R+K IT++   RN  K+VY L
Sbjct: 2837 YEMLYIFFSVLIFVKEIVFYLYGRYKVITTMKPTRNPFKIVYQL 2880


>Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical
            protein ZK945.9 protein.
          Length = 3178

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -3

Query: 149  YFVYYYFNEDLLKVIYLSLISCARFKTITSVFRVRNQLKLVYSL 18
            Y + Y F   L+ V  +      R+K IT++   RN  K+VY L
Sbjct: 2837 YEMLYIFFSVLIFVKEIVFYLYGRYKVITTMKPTRNPFKIVYQL 2880


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,797,027
Number of Sequences: 27780
Number of extensions: 242318
Number of successful extensions: 634
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 634
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)