Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0994
(701 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces pom... 29 0.85
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 28 1.1
SPAC1834.01 |sup45||translation release factor eRF1|Schizosaccha... 27 2.0
SPAC57A10.02 |cdr2||GIN4 family protein kinase Cdr2|Schizosaccha... 26 4.5
SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated memb... 26 6.0
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos... 25 7.9
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 25 7.9
SPBC3D6.16 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 7.9
SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual 25 7.9
>SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 396
Score = 28.7 bits (61), Expect = 0.85
Identities = 29/102 (28%), Positives = 42/102 (41%), Gaps = 2/102 (1%)
Frame = +3
Query: 9 PGCRNRHEARS*QTYFVFSCNFAITMGF*YLIVCTPACAFTHN-IKMLAKMAPS-QDKLV 182
P CR + RS F C I++ F I A A H I L + P +D
Sbjct: 293 PICRYCIDLRSCLVCDSFVCPSCISLDFDLQI---QAFARQHRVISTLGVVYPEREDSCF 349
Query: 183 HLHKTPTSLDINPSGLLFAFVELNHYNNECESEGVMGCGHRF 308
H K I+P LLF F E NH +++ ++ G ++
Sbjct: 350 HKIKAAQWHQISPRSLLFQFQEQNHIHHKKIRRKLLAAGWKW 391
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 28.3 bits (60), Expect = 1.1
Identities = 9/21 (42%), Positives = 17/21 (80%)
Frame = +1
Query: 298 AIDLLTNDECRLLLEVEDFFN 360
+I+ +TND+ R++ E+E F+N
Sbjct: 358 SINFVTNDDVRMMREIEQFYN 378
>SPAC1834.01 |sup45||translation release factor
eRF1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 433
Score = 27.5 bits (58), Expect = 2.0
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +2
Query: 431 STRHHRRS*NQVPPNSLTIFCSS*TVNANK 520
STR + N+VP N L I+C + NK
Sbjct: 74 STRERLKLYNKVPDNGLVIYCGEVIMEGNK 103
>SPAC57A10.02 |cdr2||GIN4 family protein kinase
Cdr2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 775
Score = 26.2 bits (55), Expect = 4.5
Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Frame = +2
Query: 404 RSKSITPRVSTRH--HRRS*NQVPPNSLTIFCSS*TVNANKRIFSPTG*RKKLTSLRSSK 577
R + PRV+ + + + N + N+ ++ T+N ++R+ +P+G R L S
Sbjct: 529 RGSAFNPRVTRFNVGNEQFSNNIDNNNYNQPYANATMNNSRRLRTPSGERSMRADLSQSP 588
Query: 578 TFLKFLNAWTHNPRQ 622
LN H RQ
Sbjct: 589 ASYDSLNVPKHRRRQ 603
>SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated
membrane proteins, ESCRT 0 complex|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 610
Score = 25.8 bits (54), Expect = 6.0
Identities = 13/52 (25%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +1
Query: 541 LEEKVDLPSIFENISEVPERVDPQPPAAVLASSPFVTSQPT-EELLREFETV 693
+E + D+ S N S +P+ P V+ SSP + P+ +++ + +T+
Sbjct: 470 IEPEPDVISTVRNSSTIPQASSSSVPKIVVDSSPVTENPPSHSDVMGQKDTI 521
>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 731
Score = 25.4 bits (53), Expect = 7.9
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +1
Query: 499 LDSQCKQENIFSNWLEEKVD-LPSIFENISEVPERVDPQP 615
+D CKQ+ +FS E++ D L SI +S + ++ P
Sbjct: 242 IDQLCKQKEVFSAEKEKRSDHLKSIQSEVSNLWNKLQVSP 281
>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 583
Score = 25.4 bits (53), Expect = 7.9
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +1
Query: 316 NDECRLLLEVEDFFNDDC 369
NDECR L + FF+ +C
Sbjct: 535 NDECRRLKQCNHFFHREC 552
>SPBC3D6.16 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 95
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +3
Query: 171 DKLVHLHKTPTSLDINPSGLLFAFVELNH 257
D + H K +S NPS LLF L H
Sbjct: 59 DGIPHSRKKVSSAHFNPSTLLFLLKRLGH 87
>SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual
Length = 304
Score = 25.4 bits (53), Expect = 7.9
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Frame = +3
Query: 147 LAKMAPSQDKLVHLH----KTPTSLDINPSGLLFAFVELNHYNNECESE 281
L + ++KLV+L T T LD + ++ A V+ N Y N C+++
Sbjct: 170 LEEFESQKEKLVYLSADSDNTITELDEDKIYIIGAIVDKNRYKNLCQNK 218
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,746,013
Number of Sequences: 5004
Number of extensions: 53664
Number of successful extensions: 141
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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