Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0993
         (709 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1851.02 |||1-acylglycerol-3-phosphate O-acyltransferase|Schi...    52   8e-08
SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces...    29   0.49 
SPAC23H4.04 |||tRNA|Schizosaccharomyces pombe|chr 1|||Manual           28   1.5  
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos...    27   2.0  
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy...    27   2.6  
SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme ...    25   8.0  
SPAC10F6.07c |mug94||sequence orphan|Schizosaccharomyces pombe|c...    25   8.0  

>SPAC1851.02 |||1-acylglycerol-3-phosphate
           O-acyltransferase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 279

 Score = 52.0 bits (119), Expect = 8e-08
 Identities = 35/120 (29%), Positives = 48/120 (40%)
 Frame = +2

Query: 338 LLGIEWHIRNGEYLSGDYGAVILNNHQCIFDALGMFNAWEIAGKMCVIMKKELFYAGTFX 517
           +L   + I N E L     AV++ NHQ   D L +   +       VI KK L Y     
Sbjct: 82  ILDFRFKIENEEILRKHKSAVLVVNHQSELDILAIGRTF--GPNYSVIAKKSLRYVPILG 139

Query: 518 XXXXXXXXXXXDRKNAKNAHKTIQDTNEALTKNKTKIWIYPEGTRNKNPNRKLLPFKKGA 697
                      DR    +A +        + K    IW++ EGTR+ +    LLP KKGA
Sbjct: 140 WFMILSDVVFIDRSRRSDAIQLFAKAARRMRKENISIWVFAEGTRSYSLKPCLLPLKKGA 199


>SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 658

 Score = 29.5 bits (63), Expect = 0.49
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +1

Query: 214 NFSILFFDFPKFYCCYTAVLAETEGRKEWNHLRSCDE 324
           +FS +  D+ + Y  Y  +       K WN+L SC+E
Sbjct: 448 DFSFMLRDYKRAYEIYDEIRNTFSQDKAWNYLASCEE 484


>SPAC23H4.04 |||tRNA|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 415

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 12/47 (25%), Positives = 20/47 (42%)
 Frame = +2

Query: 284 RDVKNGTIYARVMKHMNKLLGIEWHIRNGEYLSGDYGAVILNNHQCI 424
           R VK G ++  + KH    +  +W + +G Y           +H CI
Sbjct: 131 RQVKFGALFDALKKHCENNVKGDWWLASGHYAKSVVNIETNESHMCI 177


>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 14/26 (53%), Positives = 15/26 (57%)
 Frame = -3

Query: 665 LDSYFSFLRGISIFLSYF*LMLRWCL 588
           LDSY  F  GI +F S F   L WCL
Sbjct: 662 LDSYNIFAVGILLFTSVFAGALWWCL 687


>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 800

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
 Frame = +2

Query: 287 DVKNGTIYARVMK-HMNKLLGIEWHIRNGEYL--SGDYGAVIL 406
           D+ N     +++  H N L G+ W + NGEYL   G  G ++L
Sbjct: 247 DISNEKFNPQILHWHANPLNGLSWAL-NGEYLLSGGQEGVLVL 288


>SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1012

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 24/86 (27%), Positives = 33/86 (38%), Gaps = 5/86 (5%)
 Frame = +2

Query: 269 FLLRPRDVKN--GTIYARVMKHMN-KLLG--IEWHIRNGEYLSGDYGAVILNNHQCIFDA 433
           FL RPRDV        +  +  MN  L G    +  R G    G +G         + +A
Sbjct: 476 FLFRPRDVGKLKSECASTAVSIMNPSLTGKITSYQERVGPESEGIFGDEFFEKLSLVTNA 535

Query: 434 LGMFNAWEIAGKMCVIMKKELFYAGT 511
           L    A     + CV  +K L  +GT
Sbjct: 536 LDNVEARMYVDRRCVFFEKPLLESGT 561


>SPAC10F6.07c |mug94||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 188

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 7/22 (31%), Positives = 16/22 (72%)
 Frame = +1

Query: 475 CNNEERIILRRYLRNSSLPGRR 540
           CN++ +++    ++N+ LPG+R
Sbjct: 106 CNHDSKLVYMSLVQNNGLPGQR 127


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,070,975
Number of Sequences: 5004
Number of extensions: 65159
Number of successful extensions: 164
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)