Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0991
         (661 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe...    26   4.2  
SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit ...    25   7.3  
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    25   7.3  
SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subuni...    25   7.3  
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch...    25   9.7  

>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 317

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
 Frame = +1

Query: 25  CVSTCNALCNPGT---AQYAPS---TRTRHGTFCASSTATPTRPERATNYRPPVRAADSS 186
           C  + ++L   GT      APS   TRT    F  SS++TP+    +++  P   ++ SS
Sbjct: 114 CTISTSSLSYSGTISSTSIAPSMIGTRTSSSYFITSSSSTPSSSSSSSSSSPSSSSSKSS 173

Query: 187 YSRNGTT 207
            S   ++
Sbjct: 174 SSSKSSS 180


>SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit
           Sec63 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 611

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +3

Query: 66  TICPKHPNPTWDLLRLLHRHPNKTRTSN 149
           ++ P   NP   +L+LL  H N+ +T+N
Sbjct: 259 SLVPNEKNPKEYILKLLFDHLNRKKTNN 286


>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
 Frame = -3

Query: 317 GRLHAERSGVSHAGRPGSSPT-GDSSAPGHRPAPSG-PQVVP 198
           G LH  RS    +GRP  SP+    S P   P   G P+  P
Sbjct: 342 GSLHRSRSPSPRSGRPRRSPSPSHLSIPSTLPPADGVPKPTP 383


>SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subunit
           Rad15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 772

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +2

Query: 257 WGLTPADLHAIHRSAQHAIDQSRREQQMDNDMQE 358
           W L    +H        AI+QS+ E +MD D+ E
Sbjct: 738 WSLDDLLIHQKKALKSAAIEQSKHEDEMDIDVVE 771


>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
           Zds1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 938

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 10/39 (25%), Positives = 18/39 (46%)
 Frame = +1

Query: 52  NPGTAQYAPSTRTRHGTFCASSTATPTRPERATNYRPPV 168
           N   +  A  +    GT    + A   +PE+++  +PPV
Sbjct: 426 NKAESAVASESSLSEGTLALKAPAPENKPEKSSTSKPPV 464


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,521,331
Number of Sequences: 5004
Number of extensions: 47505
Number of successful extensions: 177
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)