Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0988
         (705 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual      40   3e-04
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    31   0.16 
SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase Alg6|Schizosac...    30   0.28 
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po...    29   0.86 
SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces po...    28   1.5  
SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|...    27   2.0  
SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl modifica...    26   6.0  
SPAC664.03 |||RNA polymerase II associated Paf1 complex |Schizos...    25   8.0  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    25   8.0  

>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 166

 Score = 39.9 bits (89), Expect = 3e-04
 Identities = 17/28 (60%), Positives = 20/28 (71%)
 Frame = +3

Query: 621 TILWNKYDGHPKGFAYIEFGDKDSVQTA 704
           TIL +K+ GHPKGFAYIEF +   V  A
Sbjct: 85  TILCDKFTGHPKGFAYIEFSEPSLVPNA 112


>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 31.1 bits (67), Expect = 0.16
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = +3

Query: 624 ILWNKYDGHPKGFAYIEFGDKDSVQTA 704
           I+ +K  G  KG AY+EF  +DSVQ A
Sbjct: 271 IVRDKISGRSKGVAYVEFCHEDSVQAA 297


>SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase
           Alg6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 506

 Score = 30.3 bits (65), Expect = 0.28
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -3

Query: 148 QVIQFITTNRTVFKLQSVFELHKITI*CKIFT 53
           +V  F  T  TVFK++ VF LH++ +   IFT
Sbjct: 293 KVANFWCTLNTVFKIREVFTLHQLQVISLIFT 324


>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 833

 Score = 28.7 bits (61), Expect = 0.86
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +3

Query: 633 NKYDGHPKGFAYIEFGDKDSVQTA 704
           +K   +PKGFAYI+F D D    A
Sbjct: 357 DKKTNNPKGFAYIDFHDADDAVRA 380


>SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 381

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +2

Query: 497 MEEEAEKLKQMQTEVDKQMSMGSPPGLTSPLNMSIEEKIEADN 625
           ME+   + K+ +TEV ++ S     GL   LN+ +     ADN
Sbjct: 65  MEKRKARFKKKETEVHEKPSQLPDSGLNYGLNIRVASSSAADN 107


>SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1064

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -2

Query: 410 YSLSR*FLPNDCCQSSLKNHHFLPFP 333
           Y   R ++P D  + SL++ HFLPFP
Sbjct: 777 YQHLRNYMPIDKNEISLRSVHFLPFP 802


>SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl
           modification enzyme|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 666

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 548 QMSMGSPPGLTSPLNMSIEEKIEADNIME 634
           ++  G+PP L+SP+N+S   +   D I E
Sbjct: 212 RLKTGTPPRLSSPINISKMTEQTGDEIPE 240


>SPAC664.03 |||RNA polymerase II associated Paf1 complex
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 457

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 8/28 (28%), Positives = 20/28 (71%)
 Frame = +2

Query: 488 VREMEEEAEKLKQMQTEVDKQMSMGSPP 571
           ++++EEE EKL+ ++  +++++S    P
Sbjct: 373 IKDLEEEEEKLRSVEGSLNEELSEEEKP 400


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
           Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 13/38 (34%), Positives = 16/38 (42%)
 Frame = +2

Query: 173 IWLPVRQILCYYGNLFTMKKICVTVYDFGYTLRVLVSE 286
           IW P R I          K +C    D  Y  +VLVS+
Sbjct: 750 IWTPWRNIFARMPKRIYSKILCTPEVDSSYKPKVLVSQ 787


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,639,121
Number of Sequences: 5004
Number of extensions: 48537
Number of successful extensions: 137
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)