Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0987
         (650 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_02_0120 - 6797954-6798970,6799466-6799951                           30   1.4  
11_03_0210 - 11693750-11693797,11694017-11694094,11694285-116943...    30   1.8  
10_08_0075 - 14676835-14677173,14677776-14678426,14678734-146789...    27   9.8  
01_06_0746 - 31636024-31641396                                         27   9.8  

>05_02_0120 - 6797954-6798970,6799466-6799951
          Length = 500

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 18/62 (29%), Positives = 31/62 (50%)
 Frame = +2

Query: 119 SSLRRGMRFFFTHSYDFSNSITSICDLQPKITFL*SSKSYTASFVFNLPLHIAMNSISDM 298
           S L  G   F  H Y+   S+ ++  LQ K+TFL  S++ ++ F   L   I+ + +S  
Sbjct: 58  SLLANGPVEFIRHHYEKMGSVFTVSLLQQKVTFLVGSEA-SSHFYKGLDSEISQDEVSQF 116

Query: 299 LV 304
            +
Sbjct: 117 TI 118


>11_03_0210 -
           11693750-11693797,11694017-11694094,11694285-11694371,
           11694751-11694884,11695021-11695093,11695352-11695408,
           11697295-11697378,11698748-11698843,11699133-11699498
          Length = 340

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +3

Query: 138 CVSFLPTHTIFRIR*LQYAICNPKLHSYSLQNRTQHL-LFLICLS 269
           CV     H IF++  L+   CN  L++ S +   +HL L LIC S
Sbjct: 91  CVGSYLGHAIFKLTGLKVLPCNNSLNTSSAEQLVKHLSLPLICCS 135


>10_08_0075 -
           14676835-14677173,14677776-14678426,14678734-14678948,
           14679510-14679783,14680249-14680410
          Length = 546

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 17/36 (47%), Positives = 23/36 (63%)
 Frame = +1

Query: 61  FTNIISTKELSKKLLTGNKVIIASRYAFLFYPLIRF 168
           FTN++S  +LS  L+  NKV   SRY  L Y L++F
Sbjct: 332 FTNLMSLADLSMMLVKTNKV---SRYD-LVYKLLKF 363


>01_06_0746 - 31636024-31641396
          Length = 1790

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -2

Query: 556 KTNVNNICILWHEACSGRDAHDIVNAIAAMIEKERDFNHLIL 431
           +T+ N IC   +  C+  +A+D +  +   I KER   H+I+
Sbjct: 721 RTHWNKICNNEYRRCAVIEAYDSIRHLLLEIIKERTNEHIIV 762


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,783,400
Number of Sequences: 37544
Number of extensions: 304947
Number of successful extensions: 647
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)