Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0987
         (650 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U61946-2|AAC24387.1|  341|Caenorhabditis elegans Serpentine rece...    29   3.8  
U41022-1|AAA82338.3|  303|Caenorhabditis elegans Hypothetical pr...    29   3.8  
AC006673-7|AAF39925.2|  332|Caenorhabditis elegans Serpentine re...    28   5.0  
Z92829-9|CAB07349.1|  360|Caenorhabditis elegans Hypothetical pr...    28   6.6  
AC006617-5|AAF39775.1|  325|Caenorhabditis elegans Serpentine re...    28   6.6  
AF077546-4|AAC26317.2|  704|Caenorhabditis elegans Hypothetical ...    27   8.7  

>U61946-2|AAC24387.1|  341|Caenorhabditis elegans Serpentine
           receptor, class h protein220 protein.
          Length = 341

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 17/70 (24%), Positives = 32/70 (45%)
 Frame = +1

Query: 13  LGIRRLKIIQNILRHPFTNIISTKELSKKLLTGNKVIIASRYAFLFYPLIRFFEFDNFNM 192
           LG   L I+ ++  +  T    T +L KKL+    + +A  +  ++ P+I +     FN 
Sbjct: 215 LGTMFLLILNSLRNYGHTRSKKTVDLQKKLIRAIFIQLALPFCIIWVPIIYYTFIGFFNA 274

Query: 193 RFATQNYILI 222
                 Y+L+
Sbjct: 275 AINNFMYVLM 284


>U41022-1|AAA82338.3|  303|Caenorhabditis elegans Hypothetical
           protein K08B5.2 protein.
          Length = 303

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
 Frame = +3

Query: 72  YFNQRTKQKIINWEQGHHCVAVCVSFLPTHTIFRIR*L--QYAICNPKLHSYSLQNRTQH 245
           YF    K K++NWE  H     C S   T     +R L     ICN +  S  LQ   ++
Sbjct: 137 YFKSLEKLKVVNWEPSHVTRRGCASRNETIPASTLRNLINFTIICNKETVSKVLQYLLEN 196

Query: 246 LLFL 257
            ++L
Sbjct: 197 EIYL 200


>AC006673-7|AAF39925.2|  332|Caenorhabditis elegans Serpentine
           receptor, class h protein4 protein.
          Length = 332

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 10/32 (31%), Positives = 18/32 (56%), Gaps = 5/32 (15%)
 Frame = -2

Query: 433 LWCDNCRAQNKN-----WILFTSLVTIIISGF 353
           +WCDNC   N +     W  + ++V +++ GF
Sbjct: 179 MWCDNCFFCNFDSLTFRWFFYVAVVAVVLGGF 210


>Z92829-9|CAB07349.1|  360|Caenorhabditis elegans Hypothetical
           protein F10A3.13 protein.
          Length = 360

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/45 (26%), Positives = 24/45 (53%)
 Frame = +1

Query: 121 IIASRYAFLFYPLIRFFEFDNFNMRFATQNYILIVFKIVHSIFCF 255
           ++A  + + +  ++R F    F+M+FA    +++VF      FCF
Sbjct: 108 LLAIHFLYRYLSVVRPFNMFIFSMKFAPLWILVLVFNFSMWTFCF 152


>AC006617-5|AAF39775.1|  325|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 65 protein.
          Length = 325

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +3

Query: 315 LGRYYKVQLFKLKNPEIIIVTSDVKRIQF 401
           +G Y+K Q  KL  P +   TSD  R+ F
Sbjct: 204 IGSYWKHQAMKLLKPHVSPNTSDATRVMF 232


>AF077546-4|AAC26317.2|  704|Caenorhabditis elegans Hypothetical
           protein T08E11.4 protein.
          Length = 704

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = -2

Query: 466 IEKERDFNHLILWCDNCRAQNKNWILFTSLVTIIIS--GFFNLKSW 335
           IEK  D   L L C+    +N+ W + T +   ++S  G   +K+W
Sbjct: 447 IEKTNDNFQLYLRCEKEECENRKWSIETEITLKLVSHNGKSLMKNW 492


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,948,617
Number of Sequences: 27780
Number of extensions: 320242
Number of successful extensions: 835
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 835
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)