Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0987
         (650 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    25   0.84 
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          23   1.9  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      23   1.9  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    22   4.5  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   5.9  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   5.9  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          22   5.9  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   7.8  

>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 21/46 (45%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = +1

Query: 67  NIISTKELSKKLLTGNKVIIASRYAFLFYPLIRFFEFD--NFNMRF 198
           NI ++  L KKL  GN  II     FL   LIRF  F   NFN+ F
Sbjct: 116 NITNSTPLLKKLYGGNSTII-----FL---LIRFKSFSLLNFNLLF 153


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +2

Query: 446 KISFFFDHCCNCINNVMSISSRTGFM 523
           K+  +FD C   INN +++ +  G M
Sbjct: 460 KLYTYFDKCDTLINNAVAVENFKGGM 485


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +2

Query: 446 KISFFFDHCCNCINNVMSISSRTGFM 523
           K+  +FD C   INN +++ +  G M
Sbjct: 460 KLYTYFDKCDTLINNAVAVENFKGGM 485


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +3

Query: 195 ICNPKLHSYSLQN 233
           IC PK+H +SL +
Sbjct: 147 ICRPKIHVFSLHD 159


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 446 KISFFFDHCCNCINNVMSISS 508
           K+  +FDH  + +NN +SI S
Sbjct: 457 KLITYFDHFESMLNNGVSIQS 477


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 446 KISFFFDHCCNCINNVMSISS 508
           K+  +FDH  + +NN +SI S
Sbjct: 457 KLITYFDHFESMLNNGVSIQS 477


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 446 KISFFFDHCCNCINNVMSISS 508
           K+  +FDH  + +NN +SI S
Sbjct: 83  KLITYFDHFESMLNNGVSIQS 103


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 10/37 (27%), Positives = 17/37 (45%)
 Frame = +1

Query: 49  LRHPFTNIISTKELSKKLLTGNKVIIASRYAFLFYPL 159
           L H F+++   +  + K       IIA +  F  YP+
Sbjct: 89  LNHKFSSVTLYRNKTVKYSARMHAIIACQMEFQLYPM 125


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,657
Number of Sequences: 438
Number of extensions: 4068
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)