Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0985
         (686 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4E9.02 |cig1|SPCC645.01|cyclin Cig1|Schizosaccharomyces pomb...    43   4e-05
SPBC19F5.01c |puc1|SPBP8B7.32c|cyclin Puc1|Schizosaccharomyces p...    41   1e-04
SPBC16E9.17c |rem1||meiosis-specific cyclin Rem1|Schizosaccharom...    31   0.21 
SPAC6G10.07 |||nuclear cap-binding complex large subunit |Schizo...    26   4.4  
SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr 1|||Ma...    26   5.9  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    26   5.9  
SPCC338.13 |cog4||Golgi transport complex subunit Cog4 |Schizosa...    25   7.8  

>SPCC4E9.02 |cig1|SPCC645.01|cyclin Cig1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 415

 Score = 43.2 bits (97), Expect = 4e-05
 Identities = 47/189 (24%), Positives = 80/189 (42%), Gaps = 11/189 (5%)
 Frame = +1

Query: 100 MTRDYTTDMFNYLICAETKPLEVPRTSS-------ITRACVINWLIKVN-GSDGNPAIIH 255
           M  DY  ++F+Y+   E K    P   S       +TR  +++W+++V       P  + 
Sbjct: 159 MVPDYDPEIFHYMQSLERKLAPPPNYMSVQQEIDWVTRHMLVDWIVQVQIHFRLLPETLF 218

Query: 256 TACWYLDSILGTSQVQLDKLQLVAAACYWIA---QKLHGPVLTATRLVKCANHAFSASRL 426
            A   +D  L    V L K+QLV  +   IA   +++H P  +           F+   +
Sbjct: 219 LAVNLIDRFLSIKVVSLQKVQLVGLSALLIACKYEEIHPP--SIYNFAHVVQGIFTVDEI 276

Query: 427 MAAEKVVLQKLKFPTQPVVPQEFITYLSWWCDNNHPGEIEVAATFLCMSGLMVDKALCEE 606
           + AE+ +L  L F      P  F+  +S     +H  +I + A +L    LM D+     
Sbjct: 277 IRAERYMLMLLDFDISWPGPMSFLRRISRADSYDH--DIRMLAKYLQEVTLM-DEIFIGA 333

Query: 607 YPSAIAAAS 633
           + S IAA +
Sbjct: 334 HISFIAATA 342


>SPBC19F5.01c |puc1|SPBP8B7.32c|cyclin Puc1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 359

 Score = 41.1 bits (92), Expect = 1e-04
 Identities = 36/146 (24%), Positives = 63/146 (43%), Gaps = 13/146 (8%)
 Frame = +1

Query: 109 DYTTDMFNYLICAETKPL-------EVPRTSSITRACVINWLIKV-NGSDGNPAIIHTAC 264
           +Y  D+ ++LI  E   L       + P      R  ++N+++++ NG D +   +  + 
Sbjct: 95  EYQEDIIHHLITREKNFLLNVHLSNQQPELRWSMRPALVNFIVEIHNGFDLSIDTLPLSI 154

Query: 265 WYLDSILGTSQVQLDKLQLVAAACYWIAQKLHG-----PVLTATRLVKCANHAFSASRLM 429
             +DS +    V    +QLVA  C WIA K H      P+L   +L  C N  ++    +
Sbjct: 155 SLMDSYVSRRVVYCKHIQLVACVCLWIASKFHETEDRVPLLQELKLA-CKN-IYAEDLFI 212

Query: 430 AAEKVVLQKLKFPTQPVVPQEFITYL 507
             E+ +L  L +      P  +I  L
Sbjct: 213 RMERHILDTLDWDISIPTPASYIPVL 238


>SPBC16E9.17c |rem1||meiosis-specific cyclin
           Rem1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 402

 Score = 30.7 bits (66), Expect = 0.21
 Identities = 27/111 (24%), Positives = 48/111 (43%), Gaps = 4/111 (3%)
 Frame = +1

Query: 190 RACVINWLIKVNGS-DGNPAIIHTACWYLDSILGTSQVQLDKLQLVAAACYWIA---QKL 357
           RA VINW++ V+   +  P  +  +   LD  L    V   K++L  A   +IA   +++
Sbjct: 175 RASVINWIVGVHTCINLLPESLFLSINVLDRFLSLQNVPASKMKLCGATALFIACKYEEI 234

Query: 358 HGPVLTATRLVKCANHAFSASRLMAAEKVVLQKLKFPTQPVVPQEFITYLS 510
           H P +    +V      +    +   EK +L  L++      P  F+  L+
Sbjct: 235 HPPTVKDLEIV--LEGEWIGEDICGMEKYMLMVLQYQLGWPGPVSFLRLLT 283


>SPAC6G10.07 |||nuclear cap-binding complex large subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 780

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = -3

Query: 495 EFLW-DHWLGWKFKFLQNNFLGSHQST 418
           E +W  HWL    K++++NFL   + T
Sbjct: 708 ENIWVSHWLNLMLKYVESNFLSVKKDT 734


>SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 387

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -3

Query: 501 SYEFLWDHWLGWKFKF 454
           +Y FLWD ++ W+ +F
Sbjct: 300 AYTFLWDVFIDWRIRF 315


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = -1

Query: 668  SRFLSNSRAFLTEAAAIADGYSSHSALSTISPDMHKKVA-ATSISPGWLLSH 516
            S  +S++++  T   + + G  +HS  ST S  MH  V+ ATS S  +  SH
Sbjct: 3689 SSSISDTKSPATVTISSSSGQFTHSTFSTGS-TMHNTVSHATSTSSSFTTSH 3739


>SPCC338.13 |cog4||Golgi transport complex subunit Cog4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 738

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 7/17 (41%), Positives = 15/17 (88%)
 Frame = -2

Query: 550 QLQSLRDGYCHTTMISK 500
           Q++ L+D +C+TT++S+
Sbjct: 62  QIEELKDAFCNTTIVSE 78


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,644,358
Number of Sequences: 5004
Number of extensions: 53204
Number of successful extensions: 133
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)