Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0982
         (663 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1753.04 |tol1||3'|Schizosaccharomyces pombe|chr 3|||Manual         26   5.6  
SPAC1A6.09c |lag1||sphingosine N-acyltransferase Lag1|Schizosacc...    25   7.4  
SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase |Schizosac...    25   9.7  
SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pomb...    25   9.7  

>SPCC1753.04 |tol1||3'|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 353

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +2

Query: 143 GVENTLLLNHQGALLAYSGYNDKDARVTAAIAS 241
           GV  TL  N+ G + AY G  +K    TAA+ S
Sbjct: 312 GVGRTLK-NNNGVIAAYKGIFEKVIEATAAVTS 343


>SPAC1A6.09c |lag1||sphingosine N-acyltransferase
           Lag1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 12/47 (25%), Positives = 23/47 (48%)
 Frame = -2

Query: 605 FAIIMFYIIAIKFKDSNN*IKYFSNQVKYFSDFSYYFAHNYLKLHIM 465
           F  + F+ + +    S+N   Y+SN+ K F D+  Y+     K + +
Sbjct: 163 FYYLCFWFLGLYIYRSSN---YWSNEEKLFEDYPQYYMSPLFKAYYL 206


>SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -3

Query: 433 ILSNSIDFFFQNAKTNSLIRI 371
           ILS  IDFFF+  KT    R+
Sbjct: 13  ILSILIDFFFREVKTRGSFRV 33


>SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +1

Query: 289 RWTTFNTSRLFKWENCNHTSC-QFITVSLCE*G 384
           +W  FNT  +  ++N  HT C Q + VS+   G
Sbjct: 354 KWKLFNTLGIMDYKNRLHTICFQDLEVSIANYG 386


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,389,010
Number of Sequences: 5004
Number of extensions: 42525
Number of successful extensions: 130
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)