Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0981
         (680 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos...    29   0.62 
SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol 3-phosphatidyltra...    28   1.1  
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch...    26   4.4  
SPBC16G5.04 |mrpl23||mitochondrial ribosomal protein subunit L13...    26   5.8  
SPBC16G5.19 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   7.7  

>SPBC18H10.03 |tif35||translation initiation factor
           eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 282

 Score = 29.1 bits (62), Expect = 0.62
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = +1

Query: 295 GFVFVTEYLDSFAALKARDKSYAIA*NNTFLKLLFGK 405
           GF FV+ Y D   A+KARD+      NN  L+  F K
Sbjct: 244 GFAFVS-YYDRDCAIKARDRLDGYGWNNLILRCEFSK 279


>SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol
           3-phosphatidyltransferase Pis1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 251

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 514 IAYRARVPPKTGQFCVPEFISGTPEL 591
           +++  R PPK G   VP FI  T EL
Sbjct: 177 LSFTPRTPPKLGYLPVPSFIYSTGEL 202


>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1133

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = +3

Query: 93  FININKSKTLTVPFTLISYTARERDGQTFPD-AHAVRRHAARLFT 224
           FIN+N       PFTL + + +E +       A   R H  RLFT
Sbjct: 319 FINVNHPSLNRSPFTLATNSMQEEEEHLKASFAQNKRDHLLRLFT 363


>SPBC16G5.04 |mrpl23||mitochondrial ribosomal protein subunit
           L13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 157

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 579 PRNELWNAKLSRFRRNASAVSYIKANLF 496
           PRN+LW+ ++ R      A    KAN+F
Sbjct: 112 PRNKLWDRRMKRLYIYDGAEHPYKANIF 139


>SPBC16G5.19 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 105

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 243 RVNVLNASYMVGGVGCVRFCFCYGIS*FVRRAQSPR 350
           +VN +   Y    + C+R+CF Y I    R+A  PR
Sbjct: 17  KVNKIERGYWF--IQCLRYCFIYIIKKQHRQADLPR 50


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,651,461
Number of Sequences: 5004
Number of extensions: 52319
Number of successful extensions: 101
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)