Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0978
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC36.03c |||spermidine family transporter |Schizosaccharomyces...    28   1.0  
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    27   1.8  
SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyc...    26   4.1  
SPCC569.05c |||spermidine family transporter |Schizosaccharomyce...    26   5.5  
SPBC36.02c |||spermidine family transporter |Schizosaccharomyces...    25   7.2  

>SPBC36.03c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 538

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 9/34 (26%), Positives = 21/34 (61%)
 Frame = +2

Query: 497 RKFIGIFWTNFIYIYISFFCIVCYLVIVEHCFKK 598
           + ++G  WT +I  ++ FF  +C L+ ++ C+ +
Sbjct: 247 KSYLGWRWTEYITSFMGFFSTLC-LLFMKECYSR 279


>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = -3

Query: 300 YQIKHTVL-LFSN-HFAA*FSVHTFKIFPVIYMSLLPCANQAW 178
           +Q+    L L+SN +F +  S +   + P+IY SL   AN+ W
Sbjct: 520 FQVAERALCLWSNEYFTSLVSQNVVTLLPIIYPSLYKTANEHW 562


>SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 364

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 15/55 (27%), Positives = 28/55 (50%)
 Frame = -1

Query: 392 CFKLW*L*LHTSN*IYI*SFYNNFNLSLCLFTKLSIQFYCLATTLQLSFLYTPSK 228
           CF    L + T++ +++  F NN  L  CL T+       + TT++ + +  PS+
Sbjct: 97  CFDGKLLAIATASKLFLYQFGNNLKLQRCLDTQNPKGLCAMVTTVEKTAIVFPSR 151


>SPCC569.05c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 576

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 8/34 (23%), Positives = 18/34 (52%)
 Frame = +2

Query: 497 RKFIGIFWTNFIYIYISFFCIVCYLVIVEHCFKK 598
           + ++G  WT +I  ++ FF +V   +  +  + K
Sbjct: 284 KSYLGWRWTEYITSFMGFFALVIVYLFCDETYSK 317


>SPBC36.02c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 577

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 7/34 (20%), Positives = 18/34 (52%)
 Frame = +2

Query: 497 RKFIGIFWTNFIYIYISFFCIVCYLVIVEHCFKK 598
           + ++G  WT +I  ++ FF ++   +  +  + K
Sbjct: 285 KSYLGWRWTEYITSFMGFFALIIVYLFCDETYSK 318


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,430,858
Number of Sequences: 5004
Number of extensions: 48262
Number of successful extensions: 102
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)