Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0974
         (733 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0433 - 29311749-29311859,29311958-29312116,29312208-293123...    31   0.71 
04_04_1644 + 35015849-35016838                                         28   6.6  
02_03_0061 + 14582724-14582840,14583360-14584334                       28   6.6  
04_01_0312 + 4206400-4206627,4206661-4207269,4207425-4207902,420...    28   8.8  

>01_06_0433 -
           29311749-29311859,29311958-29312116,29312208-29312315,
           29312449-29312531,29312617-29312786,29312833-29312903,
           29313170-29313302,29313483-29313749,29313865-29313969,
           29314053-29314144,29314263-29314363,29314426-29314552,
           29315025-29315140,29315222-29315291,29315476-29315685
          Length = 640

 Score = 31.5 bits (68), Expect = 0.71
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +2

Query: 101 FAIFMSFWAACFLELWKRYSAEMTHRWDLT-GFDVYE 208
           F  F+  WA  FL+ WKR ++ +  RW +   F  Y+
Sbjct: 249 FFFFVISWAVFFLQFWKRKNSAVLARWGINYSFSEYK 285


>04_04_1644 + 35015849-35016838
          Length = 329

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -1

Query: 724 SVPEESNILSGSTDDFPFEESDVEYRGVV 638
           +V EE  I+  + D FP+   D E+ GV+
Sbjct: 63  NVEEEFRIIRNAIDHFPYVSMDTEFPGVI 91


>02_03_0061 + 14582724-14582840,14583360-14584334
          Length = 363

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = +2

Query: 173 HRWDLTGFDVYEEHPRPQYLARLAHVKRRQLNVVTGENEPMVPFWRMRLPAT 328
           H +++  FD+    P  Q L     +    L +  GENE  +PF R R+  T
Sbjct: 240 HVFEIQDFDILIRLPIEQLLINTPRLG--SLKITLGENEFSIPFSRARITLT 289


>04_01_0312 +
           4206400-4206627,4206661-4207269,4207425-4207902,
           4208006-4208297,4209278-4209569,4210013-4210465
          Length = 783

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = +2

Query: 173 HRWDLTGFDVYEEHPRPQYLARLAHVKRRQLNVVTGENEPMVPFWRMRLPAT 328
           H +++  FD+    P  Q L     +    L +  GENE  +PF R R+  T
Sbjct: 350 HVFEIQDFDILIGLPIEQLLINTPRLD--SLKITLGENEFSIPFSRARIALT 399


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,741,770
Number of Sequences: 37544
Number of extensions: 219249
Number of successful extensions: 711
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 711
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)