Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0972
         (699 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en...    54   1e-07
L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET...    54   1e-07
L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET...    54   1e-07
U56964-7|AAB54034.1|  382|Caenorhabditis elegans Hypothetical pr...    31   1.0  
AC084158-9|AAK68559.2|  465|Caenorhabditis elegans Hypothetical ...    31   1.0  
AF014939-4|AAB63932.1| 1277|Caenorhabditis elegans Hypothetical ...    29   2.4  
Z70287-8|CAA94301.2| 1717|Caenorhabditis elegans Hypothetical pr...    28   7.4  
U20861-11|AAA62291.2| 1714|Caenorhabditis elegans Hypothetical p...    27   9.8  
AL132904-10|CAC35843.2| 1481|Caenorhabditis elegans Hypothetical...    27   9.8  

>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
            protein precursor protein.
          Length = 2272

 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 37/155 (23%), Positives = 70/155 (45%), Gaps = 7/155 (4%)
 Frame = +3

Query: 39   FWPGLSEDVEREVRRCAACXXXXXXXXXXXXXXXXVPALPWHKLASDIFEY----RKKSY 206
            +WP +   VE  VR CA C                    P   +A D+ +     +   Y
Sbjct: 1581 YWPQMRVCVENCVRTCAKCLCANDHSKLTSSLTPYRMTFPLEIVACDLMDVGLSVQGNRY 1640

Query: 207  II-LVDYFSNYVEVGQLANISSKHVINFLREQFA--RHGIPAQLVTDNGPAYSSREFRMF 377
            I+ ++D F+ Y     + +  ++ V+    E++A     IP +L+TD G  + +  F  F
Sbjct: 1641 ILTIIDLFTKYGTAVPIPDKKAETVLKAFVERWAIGEGRIPLKLLTDQGKEFVNGLFAQF 1700

Query: 378  MHDWEVHHETSSPHYPQSNGKSERTVQSVKNLLKK 482
             H  ++ H T+  +  ++NG  ER  +++ +++KK
Sbjct: 1701 THMLKIEHITTKGYNSRANGAVERFNKTIMHIMKK 1735


>L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1
            protein, isoforma protein.
          Length = 2175

 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 37/155 (23%), Positives = 70/155 (45%), Gaps = 7/155 (4%)
 Frame = +3

Query: 39   FWPGLSEDVEREVRRCAACXXXXXXXXXXXXXXXXVPALPWHKLASDIFEY----RKKSY 206
            +WP +   VE  VR CA C                    P   +A D+ +     +   Y
Sbjct: 1484 YWPQMRVCVENCVRTCAKCLCANDHSKLTSSLTPYRMTFPLEIVACDLMDVGLSVQGNRY 1543

Query: 207  II-LVDYFSNYVEVGQLANISSKHVINFLREQFA--RHGIPAQLVTDNGPAYSSREFRMF 377
            I+ ++D F+ Y     + +  ++ V+    E++A     IP +L+TD G  + +  F  F
Sbjct: 1544 ILTIIDLFTKYGTAVPIPDKKAETVLKAFVERWAIGEGRIPLKLLTDQGKEFVNGLFAQF 1603

Query: 378  MHDWEVHHETSSPHYPQSNGKSERTVQSVKNLLKK 482
             H  ++ H T+  +  ++NG  ER  +++ +++KK
Sbjct: 1604 THMLKIEHITTKGYNSRANGAVERFNKTIMHIMKK 1638


>L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1
            protein, isoformb protein.
          Length = 2186

 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 37/155 (23%), Positives = 70/155 (45%), Gaps = 7/155 (4%)
 Frame = +3

Query: 39   FWPGLSEDVEREVRRCAACXXXXXXXXXXXXXXXXVPALPWHKLASDIFEY----RKKSY 206
            +WP +   VE  VR CA C                    P   +A D+ +     +   Y
Sbjct: 1495 YWPQMRVCVENCVRTCAKCLCANDHSKLTSSLTPYRMTFPLEIVACDLMDVGLSVQGNRY 1554

Query: 207  II-LVDYFSNYVEVGQLANISSKHVINFLREQFA--RHGIPAQLVTDNGPAYSSREFRMF 377
            I+ ++D F+ Y     + +  ++ V+    E++A     IP +L+TD G  + +  F  F
Sbjct: 1555 ILTIIDLFTKYGTAVPIPDKKAETVLKAFVERWAIGEGRIPLKLLTDQGKEFVNGLFAQF 1614

Query: 378  MHDWEVHHETSSPHYPQSNGKSERTVQSVKNLLKK 482
             H  ++ H T+  +  ++NG  ER  +++ +++KK
Sbjct: 1615 THMLKIEHITTKGYNSRANGAVERFNKTIMHIMKK 1649


>U56964-7|AAB54034.1|  382|Caenorhabditis elegans Hypothetical
           protein F52E4.8 protein.
          Length = 382

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 18/58 (31%), Positives = 27/58 (46%)
 Frame = +3

Query: 498 QDFYLSLLNFRTTPRNGLDSPAQILMGRRLNTKLPTTAELLREKVDNERNYKAIMMNR 671
           Q+ +  + N+ T     + S  QIL  RRLN   P T EL  +K + +   +   M R
Sbjct: 26  QELFAGIKNYFTQEETPIPSKLQILQKRRLNENRPQT-ELKEQKTEPKTRSRQFAMLR 82


>AC084158-9|AAK68559.2|  465|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.15 protein.
          Length = 465

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -2

Query: 554 IQSITWCCSKIQQRQIKILT*IYTFFKQIFHTLY 453
           +QSI WC  K+ +R  K++  + TF    FH+LY
Sbjct: 163 LQSIRWCTPKMVRRYSKLILILATFLTG-FHSLY 195


>AF014939-4|AAB63932.1| 1277|Caenorhabditis elegans Hypothetical
            protein ZC132.5 protein.
          Length = 1277

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +3

Query: 264  SSKHVINFLREQFARHGIPAQLVTDNGPAY 353
            S+K  IN +R   +  GIP ++V+DN P +
Sbjct: 948  STKAFINAIRRFVSERGIPDRIVSDNAPQF 977


>Z70287-8|CAA94301.2| 1717|Caenorhabditis elegans Hypothetical
           protein R09E10.7 protein.
          Length = 1717

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 26/115 (22%), Positives = 52/115 (45%), Gaps = 7/115 (6%)
 Frame = +3

Query: 234 YVEVGQLAN---ISSKHVINFLREQFARHGIPAQLVTDNGPAYSSREFRMFMHDWEVHHE 404
           YV+   L+N   +   H    L+++  +  +  + V ++GP++   E++     W V +E
Sbjct: 597 YVDAPNLSNSYKMVPPHREKVLKKKKKKKKLLKRKVEEDGPSWRRNEYQGVDGIWRVLNE 656

Query: 405 TSSPHYPQSNGKSE----RTVQSVKNLLKKCIDSGQDFYLSLLNFRTTPRNGLDS 557
             + +   +    E    +T Q V+   KK +DS +     +L    TP + LD+
Sbjct: 657 ADAGNNDSTESGQESDVQKTPQRVEIPRKKKVDSVEMDVNEVLAAAFTPLDALDA 711


>U20861-11|AAA62291.2| 1714|Caenorhabditis elegans Hypothetical
            protein C28H8.3 protein.
          Length = 1714

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +3

Query: 594  KLPTTAELLREKVDNERNYKAIMMNREKIKKHY 692
            K+ +  ++L+E V+ + +Y+A   N+EKI   Y
Sbjct: 1098 KINSILKILKEPVNTQLSYRARPFNKEKIANDY 1130


>AL132904-10|CAC35843.2| 1481|Caenorhabditis elegans Hypothetical
           protein Y111B2A.14 protein.
          Length = 1481

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
 Frame = +3

Query: 177 DIFEYRKKSYIILVDYFSNYVEVGQLANISSKHVINFLREQFARHGIPAQLVTDNGPAYS 356
           +IF++R K +        N    G L       +IN L +   ++G   Q   ++ P + 
Sbjct: 561 EIFKFRVKKWTFYWTKSRNSESGGNL----DFDIINTLPDSSEKNGGGGQQDANDIPKHE 616

Query: 357 -SREFRMFMHDW 389
            SR+ RMF+H W
Sbjct: 617 RSRKARMFLHQW 628


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,225,501
Number of Sequences: 27780
Number of extensions: 285922
Number of successful extensions: 668
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 665
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)