Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0972
         (699 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    23   3.7  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   4.9  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   4.9  
AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              22   6.4  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    22   6.4  

>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 21/91 (23%), Positives = 38/91 (41%), Gaps = 2/91 (2%)
 Frame = +3

Query: 423 PQSNGKSERTVQSVKNLLKKCIDSGQD-FYLSLLNFRTTPRN-GLDSPAQILMGRRLNTK 596
           P  N ++    + +KN++K  +D G D F +  +       N  LD P    +G+ LN  
Sbjct: 199 PDLNYRNSDVREEMKNIMKFWLDKGIDGFRIDAVPHLFESANISLDEPP---LGKNLNLS 255

Query: 597 LPTTAELLREKVDNERNYKAIMMNREKIKKH 689
           L  +      K D    Y+ +   R+ +  +
Sbjct: 256 LHASLNHTLTK-DQPETYELVKEWRDFVDNY 285


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +3

Query: 516 LLNFRTTPRNGLDSPAQILMGRRLNTKLPTTAELL 620
           +LNFR +  NG +     ++G+  N+    T EL+
Sbjct: 402 ILNFRKSEHNGTNGYQYQVVGKWFNSLDIRTEELI 436


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +3

Query: 516 LLNFRTTPRNGLDSPAQILMGRRLNTKLPTTAELL 620
           +LNFR +  NG +     ++G+  N+    T EL+
Sbjct: 492 ILNFRKSEHNGTNGYQYQVVGKWFNSLDIRTEELI 526


>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 10/28 (35%), Positives = 12/28 (42%)
 Frame = +1

Query: 343 VQRTAHESLECSCMIGKYIMRRHRLITH 426
           V  T   S EC C    Y+  RH  + H
Sbjct: 81  VASTTGFSKECYCCRESYLKERHITLHH 108


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 10/28 (35%), Positives = 12/28 (42%)
 Frame = +1

Query: 343 VQRTAHESLECSCMIGKYIMRRHRLITH 426
           V  T   S EC C    Y+  RH  + H
Sbjct: 81  VASTTGFSKECYCCRESYLKERHITLHH 108


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,185
Number of Sequences: 438
Number of extensions: 3473
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)