Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0971
         (675 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   6.1  
DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex det...    21   8.1  
DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex det...    21   8.1  
DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex det...    21   8.1  
DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex det...    21   8.1  
DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex det...    21   8.1  
DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex det...    21   8.1  
DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex det...    21   8.1  

>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
 Frame = +3

Query: 348 TVVMSRGHFVFVQRVFNVDL---YYVCFTFITS 437
           T+  S G+F  +Q VFN+     Y++  T+I S
Sbjct: 192 TIEYSTGNFTCIQIVFNLRRRLGYHLFHTYIPS 224


>DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 209 YRISLINTFNNGKSKRKKKLF*YIILS 129
           Y+ S  N +NN  +   KKL  Y I++
Sbjct: 89  YKYSNYNNYNNNYNTNYKKLQYYNIIN 115


>DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 209 YRISLINTFNNGKSKRKKKLF*YIILS 129
           Y+ S  N +NN  +   KKL  Y I++
Sbjct: 89  YKYSNYNNYNNNYNTNYKKLQYYNIIN 115


>DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 209 YRISLINTFNNGKSKRKKKLF*YIILS 129
           Y+ S  N +NN  +   KKL  Y I++
Sbjct: 89  YKYSNYNNYNNNYNTNYKKLQYYNIIN 115


>DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 209 YRISLINTFNNGKSKRKKKLF*YIILS 129
           Y+ S  N +NN  +   KKL  Y I++
Sbjct: 89  YKYSNYNNYNNNYNTNYKKLQYYNIIN 115


>DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 209 YRISLINTFNNGKSKRKKKLF*YIILS 129
           Y+ S  N +NN  +   KKL  Y I++
Sbjct: 89  YKYSNYNNYNNNYNTNYKKLQYYNIIN 115


>DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 209 YRISLINTFNNGKSKRKKKLF*YIILS 129
           Y+ S  N +NN  +   KKL  Y I++
Sbjct: 89  YKYSNYNNYNNNYNTNYKKLQYYNIIN 115


>DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 209 YRISLINTFNNGKSKRKKKLF*YIILS 129
           Y+ S  N +NN  +   KKL  Y I++
Sbjct: 89  YKYSNYNNYNNNYNTNYKKLQYYNIIN 115


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,140
Number of Sequences: 438
Number of extensions: 2865
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)