Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0970
         (717 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter Itr1|Schizo...    27   2.7  
SPCPJ732.02c |||xylulose kinase |Schizosaccharomyces pombe|chr 3...    26   6.2  
SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual            25   8.2  
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S...    25   8.2  

>SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter
           Itr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 575

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +3

Query: 192 GRMYLAQVTTWKALASVVSCKIRFH 266
           GR  L  +T W  +A+++ C + FH
Sbjct: 399 GRRILLLLTVWGMIAALIVCAVAFH 423


>SPCPJ732.02c |||xylulose kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 555

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 373 SFTFISPFQRYCCSPLLHLFCYCLLCSHF 459
           S T +   Q Y CSP  H+F + +  +H+
Sbjct: 297 STTALMATQNYVCSPEYHMFAHPVTQNHY 325


>SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 421

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +2

Query: 158 IVMSVILQIFKRKDVLSASHNLESLSFCR 244
           +V+SVIL IFKR+ V  A   +  L F +
Sbjct: 279 MVVSVILPIFKRQLVAFACEGMAGLIFAK 307


>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -3

Query: 529 SVLCLMYKLQPK*DFIIKIKSIYKNGY 449
           S+LC  Y+L+P  D II      +NGY
Sbjct: 258 SLLCKDYRLRPSIDQIISHPYFKENGY 284


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,672,551
Number of Sequences: 5004
Number of extensions: 48904
Number of successful extensions: 124
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)