Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0970
         (717 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1636 + 28290642-28291574                                         28   6.4  
03_05_0781 + 27654764-27655429,27655902-27656004,27656535-276565...    28   6.4  

>07_03_1636 + 28290642-28291574
          Length = 310

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +2

Query: 587 KLAPAHPAKSRADVLLIKIPPVPPSRNGGHV 679
           KL+P  P +++   L     P  PSR GGHV
Sbjct: 189 KLSPPPPPQTQTQPLAKPPAPATPSRAGGHV 219


>03_05_0781 +
           27654764-27655429,27655902-27656004,27656535-27656590,
           27656895-27657059,27657078-27657083,27657657-27657770,
           27658170-27658262
          Length = 400

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = +2

Query: 584 VKLAPAHPAKSRADVLLIKIPPVP--PSRNG 670
           + L P  P + R  + L+K PP P  PSR G
Sbjct: 17  LSLPPRRPVQPRGGIFLLKPPPPPPFPSRRG 47


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,127,753
Number of Sequences: 37544
Number of extensions: 314617
Number of successful extensions: 787
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 787
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)