Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0968
         (677 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25B8.10 |||trans-aconitate 3-methyltransferase |Schizosaccha...    26   4.4  
SPCC1183.06 |ung1||uracil DNA N-glycosylase Ung1|Schizosaccharom...    26   5.8  
SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|...    26   5.8  
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos...    26   5.8  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    25   7.6  

>SPAC25B8.10 |||trans-aconitate 3-methyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 256

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +3

Query: 318 KVVVDW-TEDDTVSWIVDTAQSIGISEYDIPFF 413
           K+ + W T DDTV WI   ++ +G    D P F
Sbjct: 133 KLGLVWNTRDDTVPWIEKVSKILGRYRKDAPSF 165


>SPCC1183.06 |ung1||uracil DNA N-glycosylase
           Ung1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 322

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 89  PLRAEHVRHLLHPDDLSAH 145
           PL+A +V   +HP  LSAH
Sbjct: 255 PLKAHYVLRSVHPSPLSAH 273


>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 767

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +2

Query: 131 DLSAHPPRRLPSLQERKRFSHIRKLLLQSFIRRVRRA 241
           +L     ++  SL+  K     RKLLLQS I R+ +A
Sbjct: 678 NLPIRSEQKQESLETHKTIEEDRKLLLQSAIVRIMKA 714


>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
           Vas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 950

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 579 IFRYAESEPYHHEQQTMLDLDAADHKNR 662
           IFRY      HHEQ+ +LD+++    +R
Sbjct: 615 IFRYGLFLCLHHEQRILLDMNSFSDAHR 642


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
           synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 9/31 (29%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
 Frame = +3

Query: 261 NVYHTLVSCREYH---RDDWKYKVVVDWTED 344
           NVY  + S R ++    + W++  + +WT+D
Sbjct: 568 NVYRNIHSIRRHYLSLSEGWRFDHIANWTDD 598


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,738,769
Number of Sequences: 5004
Number of extensions: 57245
Number of successful extensions: 163
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)