Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0968
         (677 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0683 + 5991905-5992055,5993262-5993451,5993701-5993772,599...    29   3.4  
12_01_1064 - 10978039-10978190,10978731-10978865,10979217-109796...    29   4.5  
06_03_0038 - 15778446-15778577,15778685-15779020,15779106-157792...    28   6.0  
03_05_0056 - 20349217-20349484,20349563-20350032,20350049-203504...    28   7.9  
02_04_0333 + 22096960-22097445,22098508-22098643,22099159-220993...    28   7.9  

>08_01_0683 +
           5991905-5992055,5993262-5993451,5993701-5993772,
           5994016-5994084,5994189-5994260,5994440-5994511,
           5994623-5994694,5994777-5994848,5995276-5995347,
           5995452-5995526,5995929-5996005,5996417-5996781,
           5996872-5997070,5997151-5997309,5997391-5997509,
           5997624-5997641,5997701-5997851,5997959-5998190,
           5998272-5998422,5998517-5998876
          Length = 915

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = +3

Query: 105 TCDIYYTQTTSAPTRLDDFQVFRRGNASHIYGNYYSNPSYDAYEE 239
           T DI  T+  + P+ + ++Q+ R GN S+I  NY S  +   + E
Sbjct: 851 TGDIEMTEMVTKPSYITEWQL-RGGNTSYISSNYSSGSTTGEFRE 894


>12_01_1064 -
           10978039-10978190,10978731-10978865,10979217-10979605,
           10979669-10979892,10980011-10980172,10980256-10980906,
           10981583-10981804
          Length = 644

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +3

Query: 165 VFRRGNASHIYGNYYSNPSYDAYEEPEIENAANVY-HTLVSCRE 293
           VF     S I G+ YS+P YD  +EP  +N++  +   LVS  E
Sbjct: 340 VFGNLPMSGILGSCYSHPDYDKEKEPHGDNSSTPFADELVSAVE 383


>06_03_0038 -
           15778446-15778577,15778685-15779020,15779106-15779225,
           15779280-15779765,15779861-15779994,15780111-15780230,
           15784881-15785018,15785404-15786079,15786179-15786340,
           15786424-15786618,15786839-15787084,15787758-15787952
          Length = 979

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +3

Query: 165 VFRRGNASHIYGNYYSNPSYDAYEEPEIENAANVY-HTLVSCRE 293
           VF     S I G+ YS+P YD  +EP  +N+   +   LVS  E
Sbjct: 261 VFGNLPMSGILGSCYSHPDYDKEKEPRGDNSGTPFADELVSAVE 304


>03_05_0056 -
           20349217-20349484,20349563-20350032,20350049-20350424,
           20350546-20350568
          Length = 378

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 6/32 (18%)
 Frame = +1

Query: 553 MKICSDNL------QYLDMRKVSLTITSSRPC 630
           ++ICSD +      QY D+RK+ L +T S PC
Sbjct: 84  VEICSDAVLLEAFNQYRDVRKLPLHVTMSEPC 115


>02_04_0333 +
           22096960-22097445,22098508-22098643,22099159-22099325,
           22099447-22099567,22099660-22099760,22099908-22100006,
           22100512-22100622,22100709-22100788,22100880-22100949,
           22101880-22101965,22102097-22102166,22102250-22102338,
           22102448-22102572,22102686-22102766,22102848-22102908,
           22103002-22103060,22103134-22103273,22103391-22103480,
           22103917-22103976,22104072-22104188
          Length = 782

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +2

Query: 92  LRAEHVRHLLHPDDLSAHPPRRLPSLQERKRF 187
           LR    R  LHP     HP  R  SL++R+RF
Sbjct: 23  LRLRRFRLHLHPRPPPPHPQLRSRSLRQRRRF 54


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,588,882
Number of Sequences: 37544
Number of extensions: 392620
Number of successful extensions: 1056
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1026
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1056
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)